Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00528 ATGGAAACAGGAGAATCTGTGGCAAAGGTTATGAAGAACATGGGTCCCCAGACCTGTCAAATATGTGGAGATAACGTTGGGAAGACCATTGAGGGTGAAGTGTTTGTTGCTTGTGATGTTTGCACATTTCCTGTTTGCAGACCATGTTATGAGTACGAGAGAAAAGATGGGAATCAGTCTTGTCCTCAATGTAAAAGCAGATACAAGAGACACAAAGGAAGTCCTGCTGTTCTAGGCGACGAAGATGACGTTGAGCTTGATGTCGACGACGACGACGACGCCATTGATTTAAATTACATTTCTGAAAGTCAAAAACAGAAGCAGAAGATTGAGGAGCACATGATGAACTGGCGGATGGCATATGGACAAGCACAAGATCTCCCTTCTCCAAATTATGACAAGGAAGTTTCTTTAAATCACATTCCCTTGCTCACCAATGGGCAGGTTTCTGGAGAACTTTCAGCTGCATCGCCCGAGCATCATTCAATGGCATCCCCCGGACATCCTCGTGGGAAGCCGATATATTCTCTTTCTTATGCAGCTGATGTCAACCAATCACCTAATGTGCGAGACGTGGACGCTACAAAGGAGTATAATTCATCAGGGCTAGGCAACGTAGCTTGGAAAGAGAGAGTCGATGGCTGGAAGATGAAACAAGAGAAGAATGCTGTTCCAATGAGCACAGCCCATGCTGCATCTGAACGGGGAGGTGGAGATATCGATGCCTGCACGGACGTGCTTGTCGATGATTCCTTATTAAACGATGAAGCTCGCCAGCCTCTCTCGCGAAAGGTTTCTATTCCATCATCAAGGATAAACCCTTACCGATTGGTGATTGTTCTTCGGCTCGTGATTATTTGCTTTTTCTTGCACTACCGAATAACGAATCCTGTACGTAATGCATACGCTCTATGGATGGTATCTGTTATATGTGAGATTTGGTTTGCAATATCCTGGATATTAGATCAGTTTCCGAAGTGGTTTCCTGTAAACCGTGAGACATATATCGATCGGCTTGCATTAAGATATGATAGGGAAGGAGAACCGTCACAGCTTGCTGCCGTTGACATTTTCGTGAGTACAGTTGACCCACTGAAGGAGCCTCCACTTGTCACAGCCAACACTGTGCTGTCCATTCTCGCTGTTGACTACCCCGTTGACAAGGTCTCGTGCTACGTCTCTGATGACGGAGCTGCCATGTTGACATTTGAAGCATTATCCGAGACATCAGAGTTTGCAAGGTCATGGGTGCCTTTCTGCAAGAAATACAGCATTGAGCCTCGGGCTCCCGAATGGTACTTCGCTCAGAAAATTGATTACTTGAAGGATAAAGTTCATCCATCGTTTGTCAAAGATCGAAGAGCAATGAAGAGAGAATACGAGGAGTTTAAGGTTCGGATCAACGGCCTGGTATCGAAGGCACAAAAGGTTCCCGAAGAAGGATGGACTATGCAAGATGGAACGCCATGGCCCGGAAATAATACTAGAGACCATCCAGGAATGATCCAGGTTTTCTTGGGCCAGAACGGTGGACTGGATTCTGAAGGTAACGAGTTGCCTCGATTAGTCTATGTATCTCGTGAAAAACGTCCAGGATTCCAACATCATAAGAAAGCGGGTGCAATGAACGCTCTTGTTCGGGTGTCAGCTGTTCTTACGAATGGCCCATTCTTGTTGAATCTTGACTGTGATCACTACATAAACAATAGCAAGGCGTTGAGGGAAGCAATGTGTTTCATGATGGATCCAAACCTAGGAAAATATGTCTGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATCGATAAGAACGATCGATACGCCAACCGTAATACTGTTTTCTTTGATATAAATTTAAGAGGTTTAGATGGTATTCAAGGTCCAGTTTATGTGGGTACTGGATGTGTTTTCAATAGAACTGCACTGTATGGTTATGAACCTCCTCACAAACCGAAGCGTCGGAAACCGGGGGTTCTATCGTTACTCTGTGGTGGATCGAGAAAGAAAAATTCAAAATCAAGTAAAAAGAGTCCAGACAAGAAGAAGTCGAACAAGCACGTGGACCCGACAGTGCCAATTTTCAATCTCGACGACGTTGAAGAAGTCGTTGAAGGTGCTGGATATGATGATGAGAAGGCACTACTAATGTCGCATATGACTCTCGAGCAAAGGTTTGGCCAGTCTGCTGTTTTCGTTGCCTCGACCCTCATGGAAAACGGCGGCATTCCTCAATCTGCAACACCTGAGTCTCTTCTGAAGGAGGCTATTCATGTTATCAGCTGCGGATACGAAGACAAAACCGACTGGGGATCTGAGATTGGATGGATTTATGGCTCAGTCACTGAAGATATCCTTACAGGATTCAAAATGCATGCTCGTGGTTGGCGGTCGATTTACTGCATACCAAAACGTCCTGCCTTTAAAGGGTCGGCGCCTATCAATCTTTCAGATCGACTAAACCAAGTTCTTCGATGGGCGCTCGGTTCCGTGGAGATTCTTCTGAGTAGGCATTGCCCTATGTGGTATGGCTATGGTGGAAGGCTCAAATGGCTCGAAAGGTTTGCGTATGTGAACACAACAATCTATCCGATCACCGCTGTTCCTCTTCTCATGTACTGTACGTTACCAGCCGTGTGTCTGCTGACAAACAAATTCATTATTCCCCAGATTAGTAACATCGCAAGTATATGGTTTATATCCCTCTTCCTCTCCATCTTCGCAACGGGAATTCTCGAGATGAGATGGAGCGGAGTCGGGATCGACGAGTGGTGGAGAAACGAACAATTTTGGGTGATCGGTGGAGTTTCAGCTCACCTTTTTGCTGTTTTGCAAGGTTTGCTCAAGGTTCTAGCTGGAATCGACACAAACTTCACCGTCACGTCCAAGGCATCGGATGAAGAGGGCGACTTCACCGAGCTTTACATGTTCAAATGGACAACTCTTCTCATTCCACCAACTACACTCCTTATAGTAAACCTGGTTGGTGTTGTTGCAGGCATATCTTATGCAATCAACAGTGGATACCAATCATGGGGACCGTTGTTTGGCAAGCTATTCTTTGCCTTTTGGGTGATCATCCATCTCTATCCCTTCTTGAAAGGTTTAATGGGTCGTCAAAACCGAACACCGACCATCGTCGTCGTGTGGTCGATTCTACTTGCTTCCATCTTCTCGTTGTTATGGGTAAGAATCGATCCGTTCACTACAACAGTCATAGGTCCCGACGTCGAGGAGTGTGGAATCAACTGCTAG 3252 45.6 METGESVAKVMKNMGPQTCQICGDNVGKTIEGEVFVACDVCTFPVCRPCYEYERKDGNQSCPQCKSRYKRHKGSPAVLGDEDDVELDVDDDDDAIDLNYISESQKQKQKIEEHMMNWRMAYGQAQDLPSPNYDKEVSLNHIPLLTNGQVSGELSAASPEHHSMASPGHPRGKPIYSLSYAADVNQSPNVRDVDATKEYNSSGLGNVAWKERVDGWKMKQEKNAVPMSTAHAASERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSIPSSRINPYRLVIVLRLVIICFFLHYRITNPVRNAYALWMVSVICEIWFAISWILDQFPKWFPVNRETYIDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVHPSFVKDRRAMKREYEEFKVRINGLVSKAQKVPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDSEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDKNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPHKPKRRKPGVLSLLCGGSRKKNSKSSKKSPDKKKSNKHVDPTVPIFNLDDVEEVVEGAGYDDEKALLMSHMTLEQRFGQSAVFVASTLMENGGIPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCIPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPMWYGYGGRLKWLERFAYVNTTIYPITAVPLLMYCTLPAVCLLTNKFIIPQISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVLQGLLKVLAGIDTNFTVTSKASDEEGDFTELYMFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTTVIGPDVEECGINC 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3045951 3053150 + CmaCh08G005280.1 Cma08g00528 299223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00528 1083 MobiDBLite consensus disorder prediction 648 689 - -
Cma08g00528 1083 Pfam Cellulose synthase 355 1074 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma08g00528 1083 CDD mRING-HC-C4C4_CesA_plant 17 67 - -
Cma08g00528 1083 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 501 646 IPR029044 -
Cma08g00528 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 95 IPR013083 -
Cma08g00528 1083 PANTHER CELLULOSE SYNTHASE 6 1083 - -
Cma08g00528 1083 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 6 1083 - -
Cma08g00528 1083 Pfam Zinc-binding RING-finger 9 83 IPR027934 -
Cma08g00528 1083 SUPERFAMILY RING/U-box 5 89 - -
Cma08g00528 1083 SUPERFAMILY Nucleotide-diphospho-sugar transferases 369 893 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00072 Cma-Chr3:655840 Cma08g00528 Cma-Chr8:3045951 0 dispersed
Cma08g00528 Cma-Chr8:3045951 Cma09g00468 Cma-Chr9:2053465 0 dispersed
Cma17g01379 Cma-Chr17:9205889 Cma08g00528 Cma-Chr8:3045951 0 dispersed
Cma08g00528 Cma-Chr8:3045951 Cma07g01319 Cma-Chr7:7466028 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00528 K10999 - csv:101206590 2062.73