Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00530 ATGGCCGATCAGGTTCGACATCCCACCATCTATCAGAAGGTTGCTGGTCAGCTCTCCCTTCAGTCTGGTGTTGCTTCAGGTTTCCGAGCCTGTGATGATGGCTTCAGGAACCCTGCACTTTACCAGAGACGTGCATCAATCAGCAATTATTCTAATGCTGCTTTTCAATACCCTGCTGTGCAATCCTGCGTTGCTACAACTGATCTTTCTAGGGTTACCTCTACTGCCTCCCCCATTTTTGTTGCGGCCCCTGCTGAGAAAGGAAACTTTATGCTTGACTTTCTCATGGGTGGTGTCTCTGCCGCTGTATCCAAGACTGCCGCTGCCCCAATTGAACGTGTCAAGCTGTTGATTCAAAATCAGGACGAGATGATTAAAGCTGGACGTCTGTCTGAGCCATACAAGGGTATTGGTGATTGTTTCAAGCGTACAATCCAAGATGAGGGTTTTGGTTCCTTGTGGAGAGGAAACACTGCCAATGTCATCCGTTATTTCCCCACTCAAGCATTGAACTTTGCATTTAAGGATTACTTCAAGAGACTGTTCAACTTCAAGAAAGATAGAGATGGTTACTGGAAATGGTTTGCTGGTAACCTGGCATCAGGTGGTGCAGCTGGTGCCTCATCCCTTCTTTTCGTTTACTCTCTCGACTATGCTCGTACCCGATTGGCAAACGATGCCAAGGCTGCGAAGAAAGGTGGTGGTGGAAGGCAATTCAATGGACTGGTTGATGTTTACAGGAAGACATTGCAGTCCGATGGTATCGCTGGTCTTTACCGTGGATTTAACATTTCTTGTGTTGGTATCATCGTGTACCGTGGTCTATACTTTGGAATGTACGATTCTCTGAAGCCTGTTCTTTTGACCGGAAAGTTGCAGGATAGCTTCTTCGCTAGTTTCGCCCTTGGTTGGCTGATCACCAACGGTGCTGGGCTTGCATCATACCCAATTGACACTGTTCGTAGAAGAATGATGATGACATCTGGTGAAGCAGTGAAGTACAAGAGCTCATTGGATGCCTTCTCTCAAATCTTGAAGAACGAGGGTGCCAAGTCTCTGTTCAAGGGTGCCGGAGCCAACATTCTCCGTGCCGTTGCTGGTGCTGGTGTGCTCGCCGGTTACGACAAGTTGCAGGTTATCGTCTTCGGAAAGAAATACGGATCCGGTGGCGGCTAA 1176 47.96 MADQVRHPTIYQKVAGQLSLQSGVASGFRACDDGFRNPALYQRRASISNYSNAAFQYPAVQSCVATTDLSRVTSTASPIFVAAPAEKGNFMLDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFKRTIQDEGFGSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGGGRQFNGLVDVYRKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVLLTGKLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFSQILKNEGAKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGG 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3071532 3074573 - CmaCh08G005300.1 Cma08g00530 299225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00530 391 PRINTS Mitochondrial carrier protein signature 93 106 IPR002067 GO:0055085
Cma08g00530 391 PRINTS Mitochondrial carrier protein signature 106 120 IPR002067 GO:0055085
Cma08g00530 391 PRINTS Mitochondrial carrier protein signature 156 176 IPR002067 GO:0055085
Cma08g00530 391 PRINTS Mitochondrial carrier protein signature 208 226 IPR002067 GO:0055085
Cma08g00530 391 PRINTS Mitochondrial carrier protein signature 259 277 IPR002067 GO:0055085
Cma08g00530 391 PRINTS Mitochondrial carrier protein signature 303 325 IPR002067 GO:0055085
Cma08g00530 391 ProSiteProfiles Solute carrier (Solcar) repeat profile. 294 380 IPR018108 -
Cma08g00530 391 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 2 390 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma08g00530 391 ProSiteProfiles Solute carrier (Solcar) repeat profile. 88 181 IPR018108 -
Cma08g00530 391 PRINTS Adenine nucleotide translocator signature 90 102 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma08g00530 391 PRINTS Adenine nucleotide translocator signature 134 155 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma08g00530 391 PRINTS Adenine nucleotide translocator signature 167 179 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma08g00530 391 PRINTS Adenine nucleotide translocator signature 193 206 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma08g00530 391 PRINTS Adenine nucleotide translocator signature 299 315 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma08g00530 391 Gene3D Mitochondrial carrier domain 91 387 IPR023395 -
Cma08g00530 391 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 2 390 - -
Cma08g00530 391 Pfam Mitochondrial carrier protein 192 289 IPR018108 -
Cma08g00530 391 Pfam Mitochondrial carrier protein 295 380 IPR018108 -
Cma08g00530 391 Pfam Mitochondrial carrier protein 89 185 IPR018108 -
Cma08g00530 391 ProSiteProfiles Solute carrier (Solcar) repeat profile. 193 286 IPR018108 -
Cma08g00530 391 SUPERFAMILY Mitochondrial carrier 88 376 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00091 Cma-Chr5:390182 Cma08g00530 Cma-Chr8:3071532 8.06E-61 dispersed
Cma08g00530 Cma-Chr8:3071532 Cma08g00532 Cma-Chr8:3079821 0 dispersed
Cma08g00530 Cma-Chr8:3071532 Cma08g00531 Cma-Chr8:3075419 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00530 K05863 - csv:101203733 720.694