Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00533 ATGACAGACCCTAATTACTCCAACTTCTTCTCTCCCAATTCCTTCACCTTCATCCCTCTCCCACCATCTCCTCCGCCACTCTCTCCGCCGCAAGCTCTCCCTCTCATCAACACTCTCTCTCTGGAAACCACCGATCAACCTTCCTCCAGCACCACCAACAACCACGAAAACGCCCTCACCCTTGACTTCTGCCTCTCTTGCCCTACCTCCGATCTCGACCTTTCCACCTCCTTCCCGCCGGACCCCACCGGAAAAAACCATCACGCCGACCTCTCCCCCCTCCCTACCCCGATCTCCGGCAAGGGTCAGTTCTGGATTCCAACCCCATCTCAGATCCTCTTAGGTCCTACTCAGTTCTCCTGCCATCTTTGCTCTAAAGCCTTCAATCGATACAATAATCTTCAGATGCATATGTGGGGGCATGGTTCTCAATATAGGAAAGGACCAGAGTCCCTAAAAGGAACACAGCCGACGGCCATGCTACGGTTGCCGTGCTACTGCTGCGCACCGGGGTGCAAGCACAACATCGACAACCCGACGTCGCGACCGCTCAAGGACTTTCGCACGCTCCAGACACATTACAAACGTAAGCATGGAATCAAGCCTTTTACTTGTAGAAAATGTAGCAAAGCGTTCGCTGTAAAAGGCGATTGGCGAACGCATGAGAAGAATTGTGGGAAGATTTGGTATTGTTTTTGTGGCTCTGACTTTAAACATAAGCGCTCGCTTAAAGACCATATCAAGGCTTTTGGACAAGGTCATGGCTCGTTGGGTCTTGATTACTTTGACGACGATAACGAACCTGCATCCGAAGTTGAACAAGATGGCACCGTTGTTCACTAA 843 51.13 MTDPNYSNFFSPNSFTFIPLPPSPPPLSPPQALPLINTLSLETTDQPSSSTTNNHENALTLDFCLSCPTSDLDLSTSFPPDPTGKNHHADLSPLPTPISGKGQFWIPTPSQILLGPTQFSCHLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAPGCKHNIDNPTSRPLKDFRTLQTHYKRKHGIKPFTCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGQGHGSLGLDYFDDDNEPASEVEQDGTVVH 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3088730 3090071 + CmaCh08G005330.1 Cma08g00533 299228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00533 280 SUPERFAMILY beta-beta-alpha zinc fingers 186 223 IPR036236 -
Cma08g00533 280 ProSitePatterns Zinc finger C2H2 type domain signature. 121 141 IPR013087 -
Cma08g00533 280 Gene3D Classic Zinc Finger 118 141 - -
Cma08g00533 280 PANTHER ZINC FINGER PROTEIN WIP2 19 275 IPR043584 GO:0003700|GO:0010468
Cma08g00533 280 Pfam Zinc finger, C2H2 type 119 138 IPR013087 -
Cma08g00533 280 SUPERFAMILY beta-beta-alpha zinc fingers 111 141 IPR036236 -
Cma08g00533 280 ProSiteProfiles Zinc finger C2H2 type domain profile. 119 146 IPR013087 -
Cma08g00533 280 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 19 275 - -
Cma08g00533 280 SMART c2h2final6 119 141 IPR013087 -
Cma08g00533 280 SMART c2h2final6 203 223 IPR013087 -
Cma08g00533 280 Gene3D Classic Zinc Finger 181 254 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00533 Cma17g00951 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00533 Cma-Chr8:3088730 Cma14g00440 Cma-Chr14:2082202 1.57E-102 dispersed
Cma17g00951 Cma-Chr17:7075795 Cma08g00533 Cma-Chr8:3088730 3.67E-152 wgd
Cma02g01240 Cma-Chr2:7287914 Cma08g00533 Cma-Chr8:3088730 3.31E-116 wgd
Cma20g00075 Cma-Chr20:330635 Cma08g00533 Cma-Chr8:3088730 6.07E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35502 PF00096 zf-C2H2 0.002 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00533 - - csv:101209911 456.447