Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00556 ATGGAGCTTGGCTTGAGCTTAGGCGACACTCCCGAACCCTTCCGTTTCGTCGACAAGCAACCGCAACCTCAGCGCGGGCTTTCCCGTCCAGATTTAGGGTTCTGCGTCGACTTATCGATCGGCCGTACTATCGCCGGAGATAAAGAAGGCGACGAAGAAAAACCTAATCAGAGAGAAGAGGAATCTGACGGCAATGAAGATCCACCGATCCAACTCGATCTTCTCCCTCGCAATCCTGTTCAACGGAACCTAACAAATCCATACCAAGGATTTCCATGGCCGTCGTCCGAAAACGACGAAGTTGAAGACCGATCCGCATCGCCGAACAGCGCAGCGTCGTCGTTTCAAATGGAATTTGGATTGTACGGCGGCGGAGGGAACATTTCTACACGGATAGATCAAATGAAAAATAGCGTGGTAAACGAAGTAGGTGAATCTGAGCGAGCGTCTTCTCGAGCGAGCGATGAAGACGAAAATGGCTCCACGAGGAAGAAACTCAGATTGTCGAAAGACCAATCCGCTTACCTCGAAGAAAGCTTCAAAGAACACAACACCTTGAATCCAAAACAAAAACTGGCGCTGGCTAAGCAACTGAATCTTCGTCCGCGCCAAGTGGAAGTTTGGTTCCAAAACAGAAGAGCCAGGACGAAATTGAAGCAAACGGAGGTGGATTGTGAGTATTTGAAAAGATGCTGTGAGACATTAACAGAAGAGAACAGACGGCTACAAAAGGAGCTTCAAGAATTAAGAGCTCTGAAGACCACGAACTCATTCTACATGCAATTACCAGCCACCACACTCACCATGTGCCCATCATGTGAAAGAGTCACCTCCTCCGTCGCCACAGCCACCGACGGCGGAGGAAAACTACCTGGTTTCGCCATTTCTGGTGGCGCAAGCTCCTCTTTCCCATTTTCTGCAAAAACGCAGACCCACCAGTCAACAACTTCATGA 954 49.37 MELGLSLGDTPEPFRFVDKQPQPQRGLSRPDLGFCVDLSIGRTIAGDKEGDEEKPNQREEESDGNEDPPIQLDLLPRNPVQRNLTNPYQGFPWPSSENDEVEDRSASPNSAASSFQMEFGLYGGGGNISTRIDQMKNSVVNEVGESERASSRASDEDENGSTRKKLRLSKDQSAYLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSFYMQLPATTLTMCPSCERVTSSVATATDGGGKLPGFAISGGASSSFPFSAKTQTHQSTTS 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3178646 3180062 - CmaCh08G005560.1 Cma08g00556 299251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00556 317 MobiDBLite consensus disorder prediction 44 65 - -
Cma08g00556 317 SMART HOX_1 161 223 IPR001356 GO:0003677
Cma08g00556 317 MobiDBLite consensus disorder prediction 78 93 - -
Cma08g00556 317 CDD bZIP 212 251 - -
Cma08g00556 317 MobiDBLite consensus disorder prediction 1 111 - -
Cma08g00556 317 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 296 - -
Cma08g00556 317 ProSitePatterns 'Homeobox' domain signature. 194 217 IPR017970 GO:0000981|GO:0006355
Cma08g00556 317 MobiDBLite consensus disorder prediction 141 168 - -
Cma08g00556 317 Pfam Homeobox associated leucine zipper 219 253 IPR003106 GO:0006355|GO:0043565
Cma08g00556 317 Pfam Homeodomain 163 217 IPR001356 GO:0003677
Cma08g00556 317 PANTHER - 1 296 - -
Cma08g00556 317 SMART halz 219 262 IPR003106 GO:0006355|GO:0043565
Cma08g00556 317 SUPERFAMILY Homeodomain-like 155 220 IPR009057 -
Cma08g00556 317 ProSiteProfiles 'Homeobox' domain profile. 159 219 IPR001356 GO:0003677
Cma08g00556 317 Coils Coil 225 255 - -
Cma08g00556 317 MobiDBLite consensus disorder prediction 148 168 - -
Cma08g00556 317 CDD homeodomain 163 220 IPR001356 GO:0003677
Cma08g00556 317 Gene3D - 169 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02089 Cma-Chr4:14499939 Cma08g00556 Cma-Chr8:3178646 8.76E-48 dispersed
Cma08g00556 Cma-Chr8:3178646 Cma14g00410 Cma-Chr14:1912100 3.58E-97 dispersed
Cma09g00321 Cma-Chr9:1324538 Cma08g00556 Cma-Chr8:3178646 6.71E-60 dispersed
Cma10g00356 Cma-Chr10:1650067 Cma08g00556 Cma-Chr8:3178646 2.24E-48 dispersed
Cma15g00941 Cma-Chr15:4997473 Cma08g00556 Cma-Chr8:3178646 8.14E-47 dispersed
Cma01g00207 Cma-Chr1:941182 Cma08g00556 Cma-Chr8:3178646 2.22E-64 wgd
Cma17g00930 Cma-Chr17:6988226 Cma08g00556 Cma-Chr8:3178646 1.18E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35506 PF00046 Homeodomain 1.80E-15 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00556 K09338 - csv:101221600 508.449