Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00569 ATGACAAAGCAAGATCAGCAAGATAGACAGAGCTCTGAATCGATCATGGGGACTCCGGTGAATATCATTGTCGGATCACATGTTTGGGTTGAGGATCCTGAGGATGCTTGGATTGATGGTCAAGTTACAGATATTAGTGGCAAAAATGCCACCATATTCACCTCCATGGATAAAACTATTGTTGCGACAATTTCGAGTATATATCCGAAAGACACGGAGGCGCCGCCGGCTGGGGTTGACGACATGACGAAATTGGCATACCTCCATGAACCTGGAGTTTTGCATAATCTAGCATGTCGATTTTCTCTCAACGAGATATACACTTACACCGGGAATATTCTAATCGCCGTGAATCCTTTCCGGAGATTGCCGCATTTGTATGATATTCACATGATGGAGCAGTACAAAGGAGCTACATTCGGCGAGCTTAGTCCTCATCTTTTCGCAGTTGCAGATGCTTGCTATAGATCGATGATTAACGAGCAAGGAAGTCAGTCCATCTTAGTAAGTGGAGAGAGTGGTGCTGGTAAAACTGAGACAACGAAGATGCTCATGAGATATCTAGCGTTCATGGGAGGCAGATCAGATACAGAAGGAAGAACAGTCGAGCAGCAGGTTTTGGAGTCCAACCCTGTGTTGGAAGCATTTGGAAATGCCAAGACCGTCAAAAACAACAATTCGAGTCGTTTTGGAAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGGGCTGCCATTCGTACGTACCTTCTCGAACGGTCGCGTGTTTGCCAAGTCTCGGATCCTGAGAGAAACTACCATTGTTTTTACATGCTTTGTGCAGCACCACCAGAAGATGTCAAGAAATACAAGTTAGCAGACCCAAGGACATATCGTTATCTTAATCAAACAAATTGTTACGAAGTGGCGAATGTTGATGATTCAAGAGAGTACTTAGAGACGAGAAACGCCATGGATGTTGTAGGAATCAGCCAGGATGAACAGGATGCTATATTTCGTGTTGTAGCGGCAATACTGCATCTTGGAAACATTGAATTCATGAAAGGGAAGGAATTTGACTCCTCCAAAGTGAAAGACGAGAAATCAAATTATCATCTTCAAACAGCAGCAGAGCTACTCATGTGTGATGTGAAGGCATTGGAACATTCACTCTGTCAGCGTGTCATAGTGACTCCTGATGGGAAAATTACAAAGCCATTGGACCCAGATTCAGCAGCCTTGAGTCGTGATGCATTGGCAAAAACTGTGTATTCAAGGCTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCGAGCTTAATTGGTGTGCTTGATATTTATGGATTTGAAAGCTTCAAGGTCAATAGTTTTGAGCAGCTTTGCATCAACCTGACCAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTTTTCAAGATGGAGCAAGAGGAGTACACGAAAGAAGAAATTAACTGGAGCTATGTTGAGTTTGTGGATAATCAGGATGTCCTTGATCTCATTGAGAAGAAACCTGGAGGTATCATTGCCCTGCTTGATGAAGCCTGCATGTTTCCAAAGTCGACTCATGAAACATTTGCTCAAAAGATGTATCAGACGTACAAAGGACATAAGCGGTTCAGCAAGCCAAAACTTGCTCGAACAAACTTCACAATAAACCATTATGCTGGAGATGTTACATACCAAGCAGACCAATTTCTAGATAAAAACAAGGACTATGTAGTAGCAGAACATCAGGCTCTTCTGAATGCCTCACAATGCTCTTTTGTTGCAAATCTTTTCCCTCCACTTCCTCAGGAGAGCTCAAAGCAATCTAAGTTTTCCTCTATTGGTACTCGGTTCAAGCAACAACTCCAAGCTCTCATGGAAACATTGAATACTACAGAACCACATTATATCAGATGTGTGAAGCCCAACACAGTCTTGAAGCCTGGAATCTTTGAAAACTTCAATGTGTTGAACCAATTGAGATGTGGGGGAGTTCTCGAGGCAATTAGAATTAGCTGTGCAGGATATCCAACGAAAAGAACATTTGATGAGTTCCTTGATCGTTTTGGAATGCTTGCTCCAGATATTTCAGACGGGACCGATGAAAAATCAGCATGCATGGCAATATGCGACAGAATGGGCTTAAAGGGTTATCAGATTGGAAAAACAAAAGTGTTTCTGAGAGCTGGACAAATGGCTGAGTTGGATGCACGACGAACTGAAATATTGGCCAATGCTGTCAGACGCATCCAGCGGCAAATTCGAACCCTTCTAACTAGGAAAGAGTTTCTCACCATGAGGAGAGCTACAATTCATATGCAGAAACATTGGAGAGCGCAACTTGCTCGTAAGCTGTATGAGAAAATGAGGAGAGAAGCTGCTTCAATCCGTATACAGAAACATGCACGTGCTCATGCAGACAGAAAAGCTTACACAAAATTACTTGCTTCAGCTATAGTTATTCAAACTGGTATGCGGGCAATGGCCGCTAGAAATGAGTTCAGACACAGAAGAAGAACAAAGGCAGCTATTATTGTTCAGACTGAATGGCGAAGGGCATCAGCTATTTCAGCTTACAAACAGCAACAGAAGGCAACTCTTGCCCTTCAATGCCTCTGGCGAGCTAAAGTTGCAAGGAAAGAGCTTAAAAAACTAAAGATGGCTGCAAGAGAAACAGGGGCACTCAAGGAGGCCAAGGACAAATTGGAGAAGCGTGTCGAGGAGCTAACGTGGCGCCTGGAATTTGAGAAGCACTTGAGGATGGATGTTGAAGAAGCCAAGGGGCAAGAAGTTGCAAAGTTACAAAGTGCTTTGGAAGAAATGCAAGGGCAGCTGGATAAAGCCAATGCTGCAATCATACGTGAGAGAGAAGAAGCAAAATTGGCCATAGAACAAGCTCCACCGGTCATTAAGGAAGTGCCCGTGGTTGATGAGACCAAGCTGGAAATGTTGAGAAATCACAATGAAGAACTTGAGGGGGTGGTTGGAGAGCTGAAGAAGAAACTTGAGGAATTCGAAGAAAAGTTTGCTGAAGTAGAAAAGGAAAGTAAAGCGACACTCAAGGAGGCAGAAGAGGCACAATTGAAATCAATGCAGCTTCAGGAGACTATTGAGAGATTGGAATCAAATTTATCTAGCCTCGAGTCCGAGAACCAGGTTCTACGCCAGCAGGCTTTGGTTGCTGCAGACAATGAATCCCTCTCTGATGAACTGCAAGCCCTCAAGAGTAAGATCGGAAGTCTAGAGGCGGAGAATGAAGTTCTTCGCAACCGGACAGTAGCTGTTGAGCACGTGTCTATTCCTGCAGGGGTGCTTGCAGAAAGCAAGCCTTTGGATAACGGACAGGCTTTAGATAACGGGCAGGCTTTAGATAACGGGCATATTGTGGAAGAAGAGATTAAAGCAACTAAGGAACCACCTGTTGTTCCCGTCCTAGCTAAGCAAGGCTCGCTCACAGAAAAGCAACAGGAAAATCATGATGTCCTGCTCAAGTGCTTAGCAGAAGACAAACGTTTTGACAAAGGCAGACCAGTTGCAGCCTGTATTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAAGCAGATAAGACCAATATATTCGACAGAATTATTCACACAATCAGATCTTCTATAGAGAGTCAAGAAAATATCAGTGACCTTGCATATTGGCTTTCAACCACTTCTACCCTTTTCTATCTTCTTCAAAGTTCACTCAAGGCAGCCAATACAAGTACTGCGGCTTCACATCGCAACCGTACTTCCCCTTCAACCTTATTTGGTCGTATGGCATATGGTCTTCGATCATCTTCAATGGGTATGGGAATTTCCAGTGGATACAGTGGAATGGTGGGAAAGACAAACAATCAATCTAAAGTTGAAGCCAAGTACCCAGCATTGCTTTTTAAGCAACATCTGGCAGCATGCATTGAAAAATTGTTTGGGATGATACGTGATAACTTGAAGAAAGAAATTAGCCCTTTCTTGCATCTATGCATACAGGCACCAAGATCAGTGAGGGCCAGATCAATAAGAGGGTCATCTAAAAATATCCATTCAAATATTGTTGCAAAACAACAAGCATCAAGTATTCACTGGCAAAGCATTGTTAATAATCTAGACCAGACCTTGGATATAATGTCTGAAAATCATGTTCCCTCCATGATCATGAGAAAAATCTTCCTTCAGGTTTTCTCATTCATAAATGTCCAGCTCTTCAATAGCTTGTTACTACGACGTGAGTGCTGTTCCTTCAGTAATGGAGAGTACTTAAAGTTAGGTCTGCAGGAGTTGGAGCAATGGTGTACCAAAGCTACTGATACGTATGCTGGCTCTTCCTGGAATGAACTTCAACACATAAGACAGGCAGTAGGATTTCTGGTGTTACACCAGAAGTCCCAGAAAAGTTTGAATGAGATAACAGATGAATTGTGCCCGATTCTGAGCATCCCGCAAATATATCGCATAGGAACGATGTTCTGGGACGACAAATATGGAACTCAGGGGTTATCTCCTGATATAATTGGAAGAATGAGAGTCCTATTAGCAGAAGACTCCATCAACATCCCAAACAACTCCTTCCTGCTTGATGTGGATTCAAGCATACCATTTTCAATAGAAGAAGTATTCCGGTCCTTCGGCGAGGTTAACCTGTCCGATATCGACCCGCCGCCGCTCATAAGACAAAGATCTGATTTCCATTTTCTACTGCAGCAAGTAAGTGAATGA 4746 42.88 MTKQDQQDRQSSESIMGTPVNIIVGSHVWVEDPEDAWIDGQVTDISGKNATIFTSMDKTIVATISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGATFGELSPHLFAVADACYRSMINEQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLADPRTYRYLNQTNCYEVANVDDSREYLETRNAMDVVGISQDEQDAIFRVVAAILHLGNIEFMKGKEFDSSKVKDEKSNYHLQTAAELLMCDVKALEHSLCQRVIVTPDGKITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKVNSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTNFTINHYAGDVTYQADQFLDKNKDYVVAEHQALLNASQCSFVANLFPPLPQESSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENFNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGTDEKSACMAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRRIQRQIRTLLTRKEFLTMRRATIHMQKHWRAQLARKLYEKMRREAASIRIQKHARAHADRKAYTKLLASAIVIQTGMRAMAARNEFRHRRRTKAAIIVQTEWRRASAISAYKQQQKATLALQCLWRAKVARKELKKLKMAARETGALKEAKDKLEKRVEELTWRLEFEKHLRMDVEEAKGQEVAKLQSALEEMQGQLDKANAAIIREREEAKLAIEQAPPVIKEVPVVDETKLEMLRNHNEELEGVVGELKKKLEEFEEKFAEVEKESKATLKEAEEAQLKSMQLQETIERLESNLSSLESENQVLRQQALVAADNESLSDELQALKSKIGSLEAENEVLRNRTVAVEHVSIPAGVLAESKPLDNGQALDNGQALDNGHIVEEEIKATKEPPVVPVLAKQGSLTEKQQENHDVLLKCLAEDKRFDKGRPVAACIVYKTLLQWRSFEADKTNIFDRIIHTIRSSIESQENISDLAYWLSTTSTLFYLLQSSLKAANTSTAASHRNRTSPSTLFGRMAYGLRSSSMGMGISSGYSGMVGKTNNQSKVEAKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVRARSIRGSSKNIHSNIVAKQQASSIHWQSIVNNLDQTLDIMSENHVPSMIMRKIFLQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCTKATDTYAGSSWNELQHIRQAVGFLVLHQKSQKSLNEITDELCPILSIPQIYRIGTMFWDDKYGTQGLSPDIIGRMRVLLAEDSINIPNNSFLLDVDSSIPFSIEEVFRSFGEVNLSDIDPPPLIRQRSDFHFLLQQVSE 1581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3238982 3249843 - CmaCh08G005690.1 Cma08g00569 299264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00569 1581 Gene3D - 799 846 - -
Cma08g00569 1581 Gene3D - 847 896 - -
Cma08g00569 1581 Gene3D - 748 798 - -
Cma08g00569 1581 PANTHER MYOSIN 34 1574 - -
Cma08g00569 1581 Gene3D Kinesin motor domain 80 677 IPR036961 -
Cma08g00569 1581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 800 IPR027417 -
Cma08g00569 1581 Pfam DIL domain 1399 1502 IPR002710 -
Cma08g00569 1581 Coils Coil 937 971 - -
Cma08g00569 1581 ProSiteProfiles IQ motif profile. 820 849 IPR000048 GO:0005515
Cma08g00569 1581 Gene3D - 682 744 - -
Cma08g00569 1581 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 23 72 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma08g00569 1581 ProSiteProfiles Dilute domain profile. 1208 1523 IPR002710 -
Cma08g00569 1581 SMART iq_5 867 889 IPR000048 GO:0005515
Cma08g00569 1581 SMART iq_5 844 866 IPR000048 GO:0005515
Cma08g00569 1581 SMART iq_5 748 770 IPR000048 GO:0005515
Cma08g00569 1581 SMART iq_5 819 841 IPR000048 GO:0005515
Cma08g00569 1581 SMART iq_5 796 818 IPR000048 GO:0005515
Cma08g00569 1581 SMART iq_5 771 793 IPR000048 GO:0005515
Cma08g00569 1581 ProSiteProfiles IQ motif profile. 772 801 IPR000048 GO:0005515
Cma08g00569 1581 Coils Coil 891 925 - -
Cma08g00569 1581 Gene3D - 267 325 - -
Cma08g00569 1581 Coils Coil 1070 1097 - -
Cma08g00569 1581 CDD MYSc_Myo11 91 734 IPR036018 -
Cma08g00569 1581 ProSiteProfiles IQ motif profile. 749 776 IPR000048 GO:0005515
Cma08g00569 1581 Pfam Myosin head (motor domain) 79 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00569 1581 ProSiteProfiles IQ motif profile. 868 897 IPR000048 GO:0005515
Cma08g00569 1581 Pfam IQ calmodulin-binding motif 870 889 IPR000048 GO:0005515
Cma08g00569 1581 Pfam IQ calmodulin-binding motif 773 792 IPR000048 GO:0005515
Cma08g00569 1581 PRINTS Myosin heavy chain signature 164 189 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00569 1581 PRINTS Myosin heavy chain signature 211 238 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00569 1581 PRINTS Myosin heavy chain signature 497 525 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00569 1581 PRINTS Myosin heavy chain signature 444 472 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00569 1581 PRINTS Myosin heavy chain signature 107 126 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00569 1581 ProSiteProfiles Myosin motor domain profile. 77 746 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00569 1581 Coils Coil 987 1063 - -
Cma08g00569 1581 SMART DIL_2 1398 1505 IPR002710 -
Cma08g00569 1581 ProSiteProfiles IQ motif profile. 797 823 IPR000048 GO:0005515
Cma08g00569 1581 Gene3D Myosin VI head, motor domain, U50 subdomain 327 616 - -
Cma08g00569 1581 SMART MYSc_2a 71 747 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cma08g00569 1581 CDD MyosinXI_CBD 1159 1546 IPR037975 GO:0007015
Cma08g00569 1581 Pfam Myosin N-terminal SH3-like domain 24 61 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cma08g00569 1581 PANTHER MYOSIN-12 34 1574 - -
Cma08g00569 1581 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 800 897 IPR027417 -
Cma08g00569 1581 Gene3D - 454 638 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00569 Cma17g00917 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00569 Cma-Chr8:3238982 Cma11g00715 Cma-Chr11:3486196 0 dispersed
Cma17g00917 Cma-Chr17:6904312 Cma08g00569 Cma-Chr8:3238982 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00569 K10357 - csv:101207221 2821.96