Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00570 ATGGCCGCTGAAATTAACCAAACAAAGGAATTCATTTTCCGTTCAAAGCTTCCCGATATTCACATTCCCAATCATCTTCCACTCCATGAATATATTTTTCAAAACCTCCCCAATTACGGCTCCCGCCCCTGTTTGATTAACGGCGCCACCGGCCACGTTTACTCATACGACGACGTTCAGTTAACAGCCCGTCGTGTCGCCAGTGGACTTCACAATCTCGGGATTAAGAAGGGTGACGTCGTTATGAATTTACTTCCCAACTCGCCGGAATTTGTTTTCACGTTTCTCGGAGCGTCGTATCGCGGTGCTATCATGACGGCGGCGAATCCGTTTTACACGGCGGTGGAAATTGCCAAACAGGCGAAAGCTGCTAATGCGAAATTGATTGTCACCATGGCTTGCTTTTATGATCGGGTTAAGGATTTGGCTGAAAATGGGGTGAAAATCGTGTGTGTTGATTATGCTGTTGAGGGTTGTTTGCATTACTCTGTTTTGAGCGGCGCGGATGAATCCCATGTGCCGTTTGTGGATTTCACCGCCGATGATGTGGTGGCGCTGCCGTATTCCTCCGGCACCACGGGTTTGCCAAAGGGTGTTATGTTGACTCATAAAGGGTTGATCACAAGCGTTGCTCAACAAATCGACGGCCAAAATCCGAATCTGTATTACAAACGCAATGACGTTATCCTCTGTGTTTTGCCGTTTTTTCACATCTATTCACTCAATTCGATTTTGCTGTGTGGATTACGCGCCGGTGCTGCGATTTTGATAATGCAAAAATTCGAAATCGTTTCGCTTTTGGAATTAGTTGAGAAATATAAAGCTTCAATCGTGCCGATTGTGCCGCCGATTCTTTTAGCCATTGCTAAGTCATCGGAATTCGAGAAATACGACATGTCGTCAGTGAGGGTATTGAAATCCGGTGGAGCACCGTTGGGGAAAAAATTGGAAGACGCTGTGAGGGAGAAGTTTCCAACGGCGATTCTCGGGCAAGGATATGGAATGACCGAAGCCGGTCCGGTTCTGACCATGAGTTTAGCGTTTGCGAAAGAACCGTTTCCGGTGAAACCCGGCGCTTGTGGGACGGTGGTTCGAAATGCAGAGATGAAGATTATTGATCCAGAAACCGGCGTTTCGTTGCCGGCGAATTCCGCCGGCGAGATTTGTATCAGAGGGGATCAGATCATGAAGGGATACTTAAACGATTTGGAGTCTACGAAGAGGACTATTGACAAAGAAGGATGGCTCCACACCGGCGACATTGGATTCATCGACGACGACGACGAGCTCTTCATCGTCGACCGGCTTAAAGAACTGATAAAATTCAAGACGTTTCAGGTGGCGCCGGCGGAGCTGGAGGCTCTTCTAATCGCTCATCCCAAACTATCCGATGCAGCGGTGATTGGTATGCCGGACGAGCAAGCCGGAGAATTGCCGGTGGCATTTGTGGTGAATGCGAACGGCGGCGAAATCACAGAAGAGGACGTAAAGCAATTCATATCAGAACAAGTGGTGTTCTACAAAAGGCTAAAACGAGTGTTTTTCGTCAACGCTATCCCAAAGGCTCCGTCGGGCAAAATCCTCAGAAAAGAACTCCGATCACAATTGGCCGCCGGTGTTTACAATTAA 1629 48.07 MAAEINQTKEFIFRSKLPDIHIPNHLPLHEYIFQNLPNYGSRPCLINGATGHVYSYDDVQLTARRVASGLHNLGIKKGDVVMNLLPNSPEFVFTFLGASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVKIVCVDYAVEGCLHYSVLSGADESHVPFVDFTADDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQIDGQNPNLYYKRNDVILCVLPFFHIYSLNSILLCGLRAGAAILIMQKFEIVSLLELVEKYKASIVPIVPPILLAIAKSSEFEKYDMSSVRVLKSGGAPLGKKLEDAVREKFPTAILGQGYGMTEAGPVLTMSLAFAKEPFPVKPGACGTVVRNAEMKIIDPETGVSLPANSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDIGFIDDDDELFIVDRLKELIKFKTFQVAPAELEALLIAHPKLSDAAVIGMPDEQAGELPVAFVVNANGGEITEEDVKQFISEQVVFYKRLKRVFFVNAIPKAPSGKILRKELRSQLAAGVYN 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3253231 3255245 - CmaCh08G005700.1 Cma08g00570 299265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00570 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - -
Cma08g00570 542 SUPERFAMILY Acetyl-CoA synthetase-like 10 538 - -
Cma08g00570 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Cma08g00570 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Cma08g00570 542 Gene3D - 437 539 IPR045851 -
Cma08g00570 542 Pfam AMP-binding enzyme 38 442 IPR000873 -
Cma08g00570 542 Gene3D - 5 436 IPR042099 -
Cma08g00570 542 CDD 4CL 22 532 - -
Cma08g00570 542 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00570 Cma-Chr8:3253231 Cma11g00400 Cma-Chr11:1971997 0 dispersed
Cma08g00570 Cma-Chr8:3253231 Cma08g00571 Cma-Chr8:3258050 0 tandem
Cma01g00200 Cma-Chr1:910054 Cma08g00570 Cma-Chr8:3253231 0 wgd
Cma14g01039 Cma-Chr14:5470037 Cma08g00570 Cma-Chr8:3253231 0 wgd
Cma17g00916 Cma-Chr17:6899532 Cma08g00570 Cma-Chr8:3253231 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00570 K01904 - csv:101218361 957.592