Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00580 ATGGCGAAGATCTCACACTCACCCCACGAAAATTCCATTTCCACCACTGCTGATCCATCTCACTCTTCTCCAATCCATCAGAGTAAGGCTCTCAAGCGCACGCGTAAGTCCGTTCGTCGTGATGCTCCCGCTCAGCGTAGTTCTGTATACCGTGGCGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCACTTGTGGGATAAGAATTTTTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGAGCGTACGATGATGAAGAAGCGGCGGCTCATGCATACGACCTTGCAGCGCTCAAGTACTGGGGAGCTGAAACTGTTATTAACTTTCCACGATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGCCAATCAAGAGAAGAGTATATTAGATACTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGTGTTTCGAAGTACAGAGGTGTCGCAAGGCACCATCATAATGGGAGATGGGAAGCTCGAATCGGCAGAGTGTTCGGCAACAAATATCTTTACCTTGGAACATACGCTACGCAAGAAGAAGCTGCTAGAGCTTACGACCTGGCGGCAATAGAACATCGTGGCCTTAACGCCGTTACAAATTTCGATATCAGCCGTTACATCAAATGTCTCCGTCCAGGGGAACAGCATATCCCAGACAATGACCGTCCATCAAGTCCAAACGCCGGCGACACTGCCTCAGAATTTGACCCCAAATCCCCTCTCGAAATTACCTTTCCGTCGCAATATTCGAGCTCCGACCAACCAACCACCGCGCCGGAACCTCACGGCGGCCACCCCTCATCATCGTCGGCGACGTTGGAGCTGCTACTCCATTCGTCAAAATTTAAACACATACTAGAAAGGACATCCGCCGCCGAGACTTCACAGACGCTGCCGGAATCCGTCCGGCCGCGCCGCTGTATACCGGACGACATTCAAACCTACTTCGATTGTAGTACTCAAGATTCTGACGACATTGCCGGAAGCGACGACGGAATTTTCGGAAAGGAGGAAATAACTTGGGCTGGCCATGGCCATGGCCATGGCGGATTACGACGATCATCAAAAACGGCGATAATGGAGGTCCGGAGGACATGGCCTGAGTTTTAA 1122 50.71 MAKISHSPHENSISTTADPSHSSPIHQSKALKRTRKSVRRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNFWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGAETVINFPRLTYQDELKEMEGQSREEYIRYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAARAYDLAAIEHRGLNAVTNFDISRYIKCLRPGEQHIPDNDRPSSPNAGDTASEFDPKSPLEITFPSQYSSSDQPTTAPEPHGGHPSSSSATLELLLHSSKFKHILERTSAAETSQTLPESVRPRRCIPDDIQTYFDCSTQDSDDIAGSDDGIFGKEEITWAGHGHGHGGLRRSSKTAIMEVRRTWPEF 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3318157 3323007 + CmaCh08G005800.1 Cma08g00580 299275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00580 373 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Cma08g00580 373 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Cma08g00580 373 PRINTS Ethylene responsive element binding protein signature 188 208 IPR001471 GO:0003700|GO:0006355
Cma08g00580 373 SUPERFAMILY DNA-binding domain 48 113 IPR016177 GO:0003677
Cma08g00580 373 MobiDBLite consensus disorder prediction 247 274 - -
Cma08g00580 373 MobiDBLite consensus disorder prediction 7 27 - -
Cma08g00580 373 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Cma08g00580 373 Gene3D AP2/ERF domain 49 113 IPR036955 GO:0003700|GO:0006355
Cma08g00580 373 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Cma08g00580 373 ProSiteProfiles AP2/ERF domain profile. 49 112 IPR001471 GO:0003700|GO:0006355
Cma08g00580 373 MobiDBLite consensus disorder prediction 1 50 - -
Cma08g00580 373 MobiDBLite consensus disorder prediction 217 274 - -
Cma08g00580 373 Pfam AP2 domain 147 197 IPR001471 GO:0003700|GO:0006355
Cma08g00580 373 Pfam AP2 domain 48 104 IPR001471 GO:0003700|GO:0006355
Cma08g00580 373 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Cma08g00580 373 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 332 - -
Cma08g00580 373 SMART rav1_2 49 118 IPR001471 GO:0003700|GO:0006355
Cma08g00580 373 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Cma08g00580 373 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00580 Cma-Chr8:3318157 Cma10g00446 Cma-Chr10:2030666 7.01E-130 dispersed
Cma17g00910 Cma-Chr17:6863250 Cma08g00580 Cma-Chr8:3318157 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35508 PF00847 AP2 4.40E-09 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00580 K09285 - csv:101206499 497.278