Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00580 | ATGGCGAAGATCTCACACTCACCCCACGAAAATTCCATTTCCACCACTGCTGATCCATCTCACTCTTCTCCAATCCATCAGAGTAAGGCTCTCAAGCGCACGCGTAAGTCCGTTCGTCGTGATGCTCCCGCTCAGCGTAGTTCTGTATACCGTGGCGTCACCAGGCATAGATGGACGGGACGGTATGAGGCGCACTTGTGGGATAAGAATTTTTGGAATGAAGGACAGAATAAGAAAGGAAGACAAGGAGCGTACGATGATGAAGAAGCGGCGGCTCATGCATACGACCTTGCAGCGCTCAAGTACTGGGGAGCTGAAACTGTTATTAACTTTCCACGATTAACGTACCAAGACGAGCTTAAAGAAATGGAAGGCCAATCAAGAGAAGAGTATATTAGATACTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGTGTTTCGAAGTACAGAGGTGTCGCAAGGCACCATCATAATGGGAGATGGGAAGCTCGAATCGGCAGAGTGTTCGGCAACAAATATCTTTACCTTGGAACATACGCTACGCAAGAAGAAGCTGCTAGAGCTTACGACCTGGCGGCAATAGAACATCGTGGCCTTAACGCCGTTACAAATTTCGATATCAGCCGTTACATCAAATGTCTCCGTCCAGGGGAACAGCATATCCCAGACAATGACCGTCCATCAAGTCCAAACGCCGGCGACACTGCCTCAGAATTTGACCCCAAATCCCCTCTCGAAATTACCTTTCCGTCGCAATATTCGAGCTCCGACCAACCAACCACCGCGCCGGAACCTCACGGCGGCCACCCCTCATCATCGTCGGCGACGTTGGAGCTGCTACTCCATTCGTCAAAATTTAAACACATACTAGAAAGGACATCCGCCGCCGAGACTTCACAGACGCTGCCGGAATCCGTCCGGCCGCGCCGCTGTATACCGGACGACATTCAAACCTACTTCGATTGTAGTACTCAAGATTCTGACGACATTGCCGGAAGCGACGACGGAATTTTCGGAAAGGAGGAAATAACTTGGGCTGGCCATGGCCATGGCCATGGCGGATTACGACGATCATCAAAAACGGCGATAATGGAGGTCCGGAGGACATGGCCTGAGTTTTAA | 1122 | 50.71 | MAKISHSPHENSISTTADPSHSSPIHQSKALKRTRKSVRRDAPAQRSSVYRGVTRHRWTGRYEAHLWDKNFWNEGQNKKGRQGAYDDEEAAAHAYDLAALKYWGAETVINFPRLTYQDELKEMEGQSREEYIRYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAARAYDLAAIEHRGLNAVTNFDISRYIKCLRPGEQHIPDNDRPSSPNAGDTASEFDPKSPLEITFPSQYSSSDQPTTAPEPHGGHPSSSSATLELLLHSSKFKHILERTSAAETSQTLPESVRPRRCIPDDIQTYFDCSTQDSDDIAGSDDGIFGKEEITWAGHGHGHGGLRRSSKTAIMEVRRTWPEF | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3318157 | 3323007 | + | CmaCh08G005800.1 | Cma08g00580 | 299275 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00580 | 373 | CDD | AP2 | 147 | 208 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | PRINTS | Ethylene responsive element binding protein signature | 50 | 61 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | PRINTS | Ethylene responsive element binding protein signature | 188 | 208 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | SUPERFAMILY | DNA-binding domain | 48 | 113 | IPR016177 | GO:0003677 | |
Cma08g00580 | 373 | MobiDBLite | consensus disorder prediction | 247 | 274 | - | - | |
Cma08g00580 | 373 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
Cma08g00580 | 373 | Gene3D | AP2/ERF domain | 147 | 208 | IPR036955 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | Gene3D | AP2/ERF domain | 49 | 113 | IPR036955 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | SUPERFAMILY | DNA-binding domain | 147 | 208 | IPR016177 | GO:0003677 | |
Cma08g00580 | 373 | ProSiteProfiles | AP2/ERF domain profile. | 49 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Cma08g00580 | 373 | MobiDBLite | consensus disorder prediction | 217 | 274 | - | - | |
Cma08g00580 | 373 | Pfam | AP2 domain | 147 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | Pfam | AP2 domain | 48 | 104 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | ProSiteProfiles | AP2/ERF domain profile. | 148 | 206 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 332 | - | - | |
Cma08g00580 | 373 | SMART | rav1_2 | 49 | 118 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | SMART | rav1_2 | 148 | 212 | IPR001471 | GO:0003700|GO:0006355 | |
Cma08g00580 | 373 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 332 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00580 | Cma-Chr8:3318157 | Cma10g00446 | Cma-Chr10:2030666 | 7.01E-130 | dispersed | |
Cma17g00910 | Cma-Chr17:6863250 | Cma08g00580 | Cma-Chr8:3318157 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35508 | PF00847 | AP2 | 4.40E-09 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00580 | K09285 | - | csv:101206499 | 497.278 |