Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cma08g00582	ATGAGTGGTGACAAGAAGACGATCATTCATCGCCAAACTTCCTATAATCCTCTCTATGTCAATCCCCTTACTGACCTCCGGCACAACCGTAGCTGTAGCGACGGCGGATTCCGGCAAAGTAAAGAAAACTTGACACCCAATACGAAGGAGAAACAGAGCGATGAAAATGGAGTGCTCTGCGACAAAGAAAACGCGAATCCGAGTAATGGGTCTTGTGCTAATCCTAAGAAATTTGGGGATTTCAAGTCGTTTTCGACTGGGAAGGCGTTGAAGCCTTCGTCGCTTCATCTGTGTATGCAGATGAATGAACCAGATAAGATTTTTGGGTCTAAGTTGTGGGAGGGGACTGATTCAGAGCACTCTAGTTCGTTGAAGATTTGGGACTTTTCGGATTCTGAAGCTGCTCCAGCTTCTTCTTGGTCCACATTGCCTAACAGGTCGTTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACCTGTGTCATTGTGAAGGAGAAGTCACCGGATGGACTTCGTGGTGGTGCTTTCTATTCTCTCTACACCAATGAAGGGAAGGGAAGGCAGGACCGGAAGTTGGCGGTGGCTCGGCATCGACGACAGAATGGGAGGTCAGAGTATAAAATAGCTCAGAGTGCAAGAGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCGAAATATCATATATGGGATCAGGCGAGCCGACTGAAACCCATCCCGAGCCAGTCGAAATCGCTTCTTGCTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGTCATAGAAGCATGAAGGCTTTCATCCCCAAGCATCAAACAATTCAGCTGAAAAACACCAATCAGGTGCAGCACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGACCAAAGTCCACCAGCTTGTCTCTAGAGTTCCTCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGAAGAGCAGTTTCAGGTCTTACGATCCAAACCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGCAAGCAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCCAAGTATGTGATGGATTATAGGTATCCATTGACAGGTTACCAAGCATTTTGCATATGCCTGGCTTCCATAGATTCAAAGCTTTGTTGCTCAGTATGA	1215	45.84	MSGDKKTIIHRQTSYNPLYVNPLTDLRHNRSCSDGGFRQSKENLTPNTKEKQSDENGVLCDKENANPSNGSCANPKKFGDFKSFSTGKALKPSSLHLCMQMNEPDKIFGSKLWEGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLRGGAFYSLYTNEGKGRQDRKLAVARHRRQNGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYHIWDQASRLKPIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQTIQLKNTNQVQHIAGLPREWEEEKTKVHQLVSRVPQYNKISKQYELDFRDRGRAVSGLTIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV	404

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
8	3323496	3326691	-	CmaCh08G005820.1	Cma08g00582	299277

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cma08g00582	404	SUPERFAMILY	Tubby C-terminal domain-like	137	402	IPR025659	-
	Cma08g00582	404	Pfam	Tub family	150	398	IPR000007	-
	Cma08g00582	404	Gene3D	Tubby Protein; Chain A	142	403	IPR025659	-
	Cma08g00582	404	PRINTS	Tubby superfamily signature	225	249	IPR000007	-
	Cma08g00582	404	PRINTS	Tubby superfamily signature	340	356	IPR000007	-
	Cma08g00582	404	PRINTS	Tubby superfamily signature	360	379	IPR000007	-
	Cma08g00582	404	PRINTS	Tubby superfamily signature	381	403	IPR000007	-
	Cma08g00582	404	MobiDBLite	consensus disorder prediction	33	58	-	-
	Cma08g00582	404	PANTHER	TUBBY-LIKE PROTEIN 8	1	402	-	-
	Cma08g00582	404	PANTHER	TUBBY-RELATED	1	402	-	-
	Cma08g00582	404	MobiDBLite	consensus disorder prediction	44	58	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Cma08g00582	Cma-Chr8:3323496	Cma07g00481	Cma-Chr7:2099589	7.21E-14	dispersed
	Cma08g00582	Cma-Chr8:3323496	Cma01g01916	Cma-Chr1:12484871	6.71E-14	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	35509	PF01167	Tub	4.50E-45	CL0395	Cma	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cma08g00582	K19600		-	csv:101216780	745.732