Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00587 ATGATTATCACCGTGAAGGATTCGACGATGGTGAGACCAGCGGTGGAGACACCGCGCCGGAGTCTCTGGAACTCGAACGTCGATCTGGTGGCGCCGAGTATCCACACGCCGAGCGTCTACTTCTACCGACCAACCGGTGCTTCCAATTTCTTCGACAGTCAGGTTCTCAAGGACGGCCTAAGCAAGGCGCTGGTCCCGTTCTATCCAATGGCTGCACGGTTACGGCGCGATGAGGACGGTCGAATCGAGATCGATTGTAACGCTGAAGGTGTGCTTTTTGTCGAGGCTGAGACGACGGCGGTTATCGATGATTTCGGTGATTTCACGCCGACGTTGCGGCTCCAACAACTTATTCCGGCCGTCGATTACTCCGGCGGAATCGAATCGTATCCGTTGTTGGTGTTACAGGTGACTCACTTCAAATGTGGAGGAGCTTCGCTCGGGGTCGGGATGCAACACCACCTGGCTGATGGCTTCTCTGGTCTCCACTTCATCAACACTTGGTCCGACATGTCGCGTGGCCTCGACCTCAAGCTCTCACCATTCATCGACCGGAGCCCTCTCCGAGCGCGGGATCCACCTCAACCAATTTTTCGGCATGTCGAATACCAACCGGCTCCGCCCATGAAAACCCCGGTCGAACCCGACCCGGAAGGTACTACCGTCTCCACCTTCAAATTGAGCCGCGAGCAGCTCAATCTACTCAAAGCCAAATCCAAGGAAAACGGCAACACTACCAACTACAGCTCCTACGAGATGCTCTCTGCCCACGTCTGGCGGTGCACGTGCAAGGCACGTAATTTGCCGGAGGATCAGGACACTAAGCTCTACATTCCCACCGACGGCCGTGCCCGGTTACGCCCGCCGCTTCCCAACGGCTACTTCGGTAACGTCATCTTCACGGCGACGCCGGTAGCCGTCGCAGGGGAACTGATGTCGAAACCGACGTGGTTCGCCGCTGGCAAGATCCACGAAGCTTTGATTCAAATGGACAACGATTATTTGAGATCGGCTTTGGACTATCTCGAGGTTCAGCCGGACTTATCGGCGTTGGTTCGTGGGGCTCATACTTTCCAGAATCCGAATTTGGGGATCACGAGCTGGGTTCGGCTTCCGATTCACGACGCCGATTTCGGGTGGGGCCGGCCGATTTTTATGGGCCCTGGTGGAATTGCGTACGAGGGATTGTCGTTTGTAATCCCGAGTGCTTCCGACGACGGCAGCTTATCGGTGACCATTTCTCTCCAGACTCAACATATGAAAGCGTTTGAGAAGCTGTTCTTTGATATCTGA 1293 55.45 MIITVKDSTMVRPAVETPRRSLWNSNVDLVAPSIHTPSVYFYRPTGASNFFDSQVLKDGLSKALVPFYPMAARLRRDEDGRIEIDCNAEGVLFVEAETTAVIDDFGDFTPTLRLQQLIPAVDYSGGIESYPLLVLQVTHFKCGGASLGVGMQHHLADGFSGLHFINTWSDMSRGLDLKLSPFIDRSPLRARDPPQPIFRHVEYQPAPPMKTPVEPDPEGTTVSTFKLSREQLNLLKAKSKENGNTTNYSSYEMLSAHVWRCTCKARNLPEDQDTKLYIPTDGRARLRPPLPNGYFGNVIFTATPVAVAGELMSKPTWFAAGKIHEALIQMDNDYLRSALDYLEVQPDLSALVRGAHTFQNPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFVIPSASDDGSLSVTISLQTQHMKAFEKLFFDI 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3346101 3348198 - CmaCh08G005870.1 Cma08g00587 299282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00587 430 SUPERFAMILY CoA-dependent acyltransferases 199 420 - -
Cma08g00587 430 Gene3D - 210 430 IPR023213 -
Cma08g00587 430 Gene3D - 1 205 IPR023213 -
Cma08g00587 430 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 429 - -
Cma08g00587 430 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 4 429 - -
Cma08g00587 430 Pfam Transferase family 2 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01195 Cma-Chr5:9248668 Cma08g00587 Cma-Chr8:3346101 1.34E-15 dispersed
Cma07g01157 Cma-Chr7:6339564 Cma08g00587 Cma-Chr8:3346101 2.02E-114 dispersed
Cma07g01158 Cma-Chr7:6346080 Cma08g00587 Cma-Chr8:3346101 2.70E-78 dispersed
Cma08g00587 Cma-Chr8:3346101 Cma10g00044 Cma-Chr10:162694 1.34E-87 dispersed
Cma16g00514 Cma-Chr16:2646097 Cma08g00587 Cma-Chr8:3346101 3.60E-27 dispersed
Cma17g00903 Cma-Chr17:6827140 Cma08g00587 Cma-Chr8:3346101 0 wgd
Cma08g00587 Cma-Chr8:3346101 Cma09g00419 Cma-Chr9:1814030 1.57E-30 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00587 K13065 - csv:101214857 781.171