Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00588 ATGGGGATATATCTGAGCTCCCCCAAAACAGAAAAGGCCTCGGATGATGGTGAGAACGAAAGACTTCGGTACGGCCTTTCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGACTTGGACACATCAACATCTTTCTTTGGTGTTTATGATGGCCATGGAGGTAAAGCAGTTTCTAAGTTCTGTGCCAAGTACCTTCACCGACAGGTGCTCAAGCATGAATCATACATGGCTGGAGATTTGGGAACTTCATTACAGAAGTCCTTTCTCAGAATGGATGAGATGATGCTTGGACAGAGGGGATGGAGAGAGTTAGCTGTTTTGGGAGACAAAATGGACAAGATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGAGTAGCGAAGCTAACAACCAAGTGGACAGTTGGTCTGCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGCACAGCTTGTGTTGCAATCATTCGAAATAACCAACTTGTGGTAGCAAATGCTGGTGATTCTCGCTGTGTCATTTCCAGAAAGGGCCAGGCATATAATCTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGGATTCTGAAAGCTGGTGGTTTCATCCGAGTTGGTCGTGTCAATGGAAGTCTCAACTTGGCACGAGCTATAGGAGACATGGAATTTAAGCAGAATAAAAGTATGCCTGCAGAAAAGCAGATTGTAACAGCCAACCCAGATATAACAACTGTTGAGCTTTGTGAGGATGACGAGTTTCTTGTAATTGCCTGTGATGGGATCTGGGATTGCATGTCTAGCCAACAACTGGTCGACTACATTGGAGATCAACTAAAAACAGAAAGCAAACTCTCAGTTATTTGCGAGAGAGTATTTGACAGATGCTTGGCACCTTCAGCTGGTGGTGAAGGATGTGACAACATGACCATGATCTTGGTTCAGTTTAAGAAACCCTTCAACCCAAATGCTGCTTCTGCTGAGGAGCTGCCTTCATCGTCCAATCAACTTAGATCTGATGATCCAAACGAAGGCTCTTCTAAAACCGAATAG 1089 45.09 MGIYLSSPKTEKASDDGENERLRYGLSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDLGTSLQKSFLRMDEMMLGQRGWRELAVLGDKMDKISGMIEGFIWSPKSSEANNQVDSWSAEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDITTVELCEDDEFLVIACDGIWDCMSSQQLVDYIGDQLKTESKLSVICERVFDRCLAPSAGGEGCDNMTMILVQFKKPFNPNAASAEELPSSSNQLRSDDPNEGSSKTE 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3350272 3355180 + CmaCh08G005880.1 Cma08g00588 299283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00588 362 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Cma08g00588 362 SMART PP2C_4 13 326 IPR001932 -
Cma08g00588 362 SUPERFAMILY PP2C-like 3 330 IPR036457 -
Cma08g00588 362 CDD PP2Cc 23 328 IPR001932 -
Cma08g00588 362 MobiDBLite consensus disorder prediction 338 354 - -
Cma08g00588 362 Pfam Protein phosphatase 2C 23 102 IPR001932 -
Cma08g00588 362 Pfam Protein phosphatase 2C 141 313 IPR001932 -
Cma08g00588 362 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Cma08g00588 362 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 341 - -
Cma08g00588 362 MobiDBLite consensus disorder prediction 336 362 - -
Cma08g00588 362 Gene3D - 1 329 IPR036457 -
Cma08g00588 362 PANTHER PROTEIN PHOSPHATASE 2C 1 341 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00588 Cma-Chr8:3350272 Cma05g01243 Cma-Chr5:9542146 6.28E-39 dispersed
Cma01g01674 Cma-Chr1:11423158 Cma08g00588 Cma-Chr8:3350272 0 transposed
Cma17g00902 Cma-Chr17:6820003 Cma08g00588 Cma-Chr8:3350272 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00588 K17499 - csv:101214132 682.174