Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00596 ATGGCCCGACCTCAACAACAATATCGCGGTGTTCGTCAGCGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTAAAGACGAGAATATGGTTGGGGACGTTCGAGACGGCGGAGGATGCAGCCCGAGCCTACGACGAGGCAGCGAGACTGATGTGCGGCCCCAAAGCCAGAACTAATTTCCAACTCAATCTCAACGATCAACCCTCCTTTTCTTCTTCCTCCAACCTTCTCTCCCCGGCGCTCATAGCCAAACTACACAAATGCCATTTAGCCTCACTCCAAATCGCCAAAAAACACATCCATAAGCAACACCCCGGGTTCGACCCAAACGGTGGTCCTCCACCGAGCATTTCCAGAACCACCACCGGCCAGTGGCCACCGGAAGAAACATGGGTCTACTCCGACGAAGCCCAAATGAAGATCAACAACAACATTCATCATCAGCCATGCCTTCAACCTCTTGAAGATGATCACATTGAACAAATGATTCAAGAGCTGCTAGATCTCGGACCGTTCGAAATCATTACATAG 540 51.11 MARPQQQYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQLNLNDQPSFSSSSNLLSPALIAKLHKCHLASLQIAKKHIHKQHPGFDPNGGPPPSISRTTTGQWPPEETWVYSDEAQMKINNNIHHQPCLQPLEDDHIEQMIQELLDLGPFEIIT 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3388485 3389168 + CmaCh08G005960.1 Cma08g00596 299291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00596 179 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cma08g00596 179 MobiDBLite consensus disorder prediction 105 130 - -
Cma08g00596 179 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cma08g00596 179 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 178 - -
Cma08g00596 179 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cma08g00596 179 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cma08g00596 179 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Cma08g00596 179 PANTHER ETHYLENE RESPONSE FACTOR 1 178 - -
Cma08g00596 179 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Cma08g00596 179 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cma08g00596 179 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00596 Cma17g00889 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00596 Cma-Chr8:3388485 Cma11g00547 Cma-Chr11:2624261 1.18E-30 dispersed
Cma01g00172 Cma-Chr1:766805 Cma08g00596 Cma-Chr8:3388485 2.98E-50 wgd
Cma12g00356 Cma-Chr12:1805054 Cma08g00596 Cma-Chr8:3388485 8.90E-51 wgd
Cma17g00889 Cma-Chr17:6760886 Cma08g00596 Cma-Chr8:3388485 3.47E-95 wgd
Cma05g00357 Cma-Chr5:1600464 Cma08g00596 Cma-Chr8:3388485 8.35E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35510 PF00847 AP2 9.40E-12 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00596 - - cmo:103499832 280.411