Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00597 ATGAATAATCTTCATGCTATTTTAATCCCCATGTGGGATTTCTATTTCTTGTTCCTAATGATCGATGCCAGGCCAGAGCTTGCTGGGTTTTCAATTTCTCACATGGTAGCCAAAATGGAAGCTCAATCCCCAGGAGTTCCTGAGGTTATTAGAGTAGTTCATCACCAAGATTTGAACAAGAGAATCCTTGTAGCATTGGTTGTTTCTTCCACTCTTCTTGGAGCTATATTGTTGTTCCTTTTGTGTGTTTGGATATATCGTCGAAGAACGTCGAAACTCGATGATGGAGAATGTCGAAAGGATTTGGAGGTTTCGAAATCGACGACGATGAACCCCATATCCAGATTTAACTCCTTGAGGTTGGCTAATTTTAAAGGTTCGGTTTCGATGATCGATTATAAACTGTTGGAAGCCGCTACTGATAACTTCAGCAAAAGCAATGTTTTAGACGAGGGTAGTACTGGACATGTTTATAAAGCTCGATTCGATGATAAAATGCTTGCAGCTGTGAAGAGAATCGACTATGGAGGACCGGATGCTGAACGAGAATTTGAGAATGAAGTGAACTGGCTGCGTAAAATACGTCATCAAAACATAATCAAGCTCTTGGGGCACTGCATTCGTGACGAAACACGGTTTCTTGTTTACGAGATGATGCAGAATGGATCTTTGGAGTCTCAATTGCACGGACCTTCTCATGGATCGGCTTTAACGTGGCATCTCCGAATGAAGATCGCGGTCGACATTGCAAGAGGATTGGAGTATCTTCACGAGCACCGAAGTCCTCCGGTCGTTCACCGTGACTTGAAATCATCGAATATCCTTCTAGATTCGGACTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAGAACATAAAGCTCTCCGGAACGCTCGGATATGTTGCCCCCGAGTACCTTTTAGACGGTAAACTAACAGATAAAAGCGACGTCTATGCTTTCGGAGTCGTTCTTTTAGAGCTTCTGACCGGGAAAAAGCCCGTCGAGACAATGGGACCTACTCAATCCCAATCTCTAGTTTCATGGGCAATCCCGCAACTTGGCGACCGATCAAAGCTACCGAAAGTTGTTGATCCCGTGATAAGGGACACAATGGATTTGAAGCACTTATACCAAGTTGCTGCTGTAGCCGTGTTATGTGTACAATCGGAACCGAGCTATCGACCGTTAGTTACCGACGTTCTGCATTCCCTGATTCCTCTTGTACCTGTAGAGCTTGGAGGCTCACTAAGAATTACCGAACCGCTACATCTGAAAGAGCCTTCGTCGACCCGATCATAG 1323 44.37 MNNLHAILIPMWDFYFLFLMIDARPELAGFSISHMVAKMEAQSPGVPEVIRVVHHQDLNKRILVALVVSSTLLGAILLFLLCVWIYRRRTSKLDDGECRKDLEVSKSTTMNPISRFNSLRLANFKGSVSMIDYKLLEAATDNFSKSNVLDEGSTGHVYKARFDDKMLAAVKRIDYGGPDAEREFENEVNWLRKIRHQNIIKLLGHCIRDETRFLVYEMMQNGSLESQLHGPSHGSALTWHLRMKIAVDIARGLEYLHEHRSPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVETMGPTQSQSLVSWAIPQLGDRSKLPKVVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHLKEPSSTRS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3392676 3395378 - CmaCh08G005970.1 Cma08g00597 299292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00597 440 Pfam Protein tyrosine and serine/threonine kinase 146 379 IPR001245 GO:0004672|GO:0006468
Cma08g00597 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 264 276 IPR008271 GO:0004672|GO:0006468
Cma08g00597 440 PANTHER BNAC02G46490D PROTEIN 30 432 - -
Cma08g00597 440 Gene3D Transferase(Phosphotransferase) domain 1 219 417 - -
Cma08g00597 440 PANTHER OS01G0750732 PROTEIN 30 432 - -
Cma08g00597 440 SUPERFAMILY Protein kinase-like (PK-like) 120 412 IPR011009 -
Cma08g00597 440 Gene3D Phosphorylase Kinase; domain 1 104 218 - -
Cma08g00597 440 SMART serkin_6 143 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00597 440 ProSiteProfiles Protein kinase domain profile. 143 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00597 Cma17g00888 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00597 Cma-Chr8:3392676 Cma11g01121 Cma-Chr11:6304589 4.00E-89 dispersed
Cma12g00353 Cma-Chr12:1795017 Cma08g00597 Cma-Chr8:3392676 2.59E-160 wgd
Cma17g00888 Cma-Chr17:6754756 Cma08g00597 Cma-Chr8:3392676 0 wgd
Cma05g00362 Cma-Chr5:1615378 Cma08g00597 Cma-Chr8:3392676 1.49E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68753 PF00069 Pkinase 2.30E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00597 - - bhj:120085274 757.288