Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00624 ATGGAGATCAAAGAAAAGAAGAGAATTTCAAGCTTCTCCTCCTCTCCATTTATGTCATCATCTTCTTTGATGGCTTTCCTCCTGGTTTTCCTCTGCTTCATCCTTTACGCCCCCATCGCCGCATTCGCCCTCGGCCCTGGCTCCGGCGTCTCCTTCATTCCTAAAGACAACTTTCTCCTTGACTGTGGTGCCACAAAGGAACTTGGTGCACTCCCTGATGGAAGAGTGTTCAAAACTGATGACCAATCCCTGCAGTTCCTAGATGCCAAGGATGAGATGGTAGCCGCCGCCCCACCCGATACAAACGCCCCATCCCCCGTCGATTTGACAGCCAGAGTCTTCCTCCAAGAAGCTGCTTACCATTTTCAGATGGCTGAGCCTGGATGGCATTGGCTGCGCCTCCATTTCTTGCCTGTTAAAACCAATGACTTTGATCTCTTGGAGGCCAAATTTTCAGTTGTCACTGAAAAGTATGTGTTGCTTCACAGCTTCAACATCAACAATGAATCCACATTTGTTCTCAAGGAGTTTCTACTTAATATCACTGAACCAAAACTCTCAATCAAGTTCCTTCCAATGAAGAATTCAGCTGCTTTCATCAGCGCCATCGAGGTCGTTTCTGCTCCGGAGGGCATGATCTCCGACTCCAACATGGAGCTGTCTCCAGTCGGGATGGTCGACGGCCTAAGCAAATATGCATTTCAGACAGTGTATAGGCTGAACATGGGAGGTCCTGTAATCACTCCAAGAAATGACACTCTTGGGAGGACATGGGAGCGAGATGAAGCTTACAGGAAACCTTTAGCTGCTGGAAAGAATGTTGTTGTTCAGACCAACAGCATCAAATATCAAGACGGCCTGGAAGAAATTGGGAAGTTAATTGCGCCTCCAAGTGTTTATGCAAGTGCAGTTCAAATGGGAGATGTTCAATCCATGGAACCAAATTTCAATATCACATGGAGATTTGAGGCAGATCCCTCATTTGGGTATCTAATTCGCTTCCATTTCTGTGACATTGTCAGCAAAGTTCTAAACAATCTGTATTTCAATGTTTATGTAAATGGGAAGGCTGCCATAACCAACTTGGATTTGTCACACAAGCTAGGAGTTTTGGCAACTGCATACTACCAGGATGTTGTGATTAATTCTTCCTTCATTGTAGAGGGATTGACAATTCAGATTGGTCCAGCGAATGTCGATACGGGCGATGCGAATGCAATTCTAAATGGGTTAGAGGTAATGAAAATAAGCAATTCTGTTAATAGTCTGGATGGAGAGTTTGGAGTGGATGGTAAGTCTGCAAATGGGTCAAACCGTGGCACGGTTGCTGCTGTTGGGTTCGCGATGATGTTTGGGGCGTTTGTCGGGCTCGGTGCGATGGTGATGAAATGGCACAAGAGACCTCAAGATTGGCAGAAGAGGAACAGTTTCTCTTCATGGTTGCTTCCTGTACATGCTGGTGATTCAAGCTTTATGACAAGCAAGACCTCATATGGTTCACACAAGACCAACACTGGTTTAGGCCTTGGCAGGTTCTTCACTTTGGCAGAGCTGCAAGAAGCAACCAAGAACTTTGATTCCAATGCAATAATTGGTGTTGGTGGGTTTGGAAATGTGTACCTTGGAGTGATTGATGAAGGCACCAAAGTTGCTGTAAAAAGAGGAAATCCACAATCAGAACAAGGCATAACAGAGTTCCAAACAGAAATTCAAATGCTTTCAAAGCTAAGACACAGGCATTTGGTTTCTTTGATTGGATACTGTGATGAAAACTCAGAAATGATCTTGGTATATGAGTTCATGTCAAATGGCCCATTCAGAGATCACTTGTATGGAAAGAACTTGTCTCCGTTGTCGTGGAAGCAAAGGCTCGAGATCTGTATCGGATCGGCTCGAGGTCTTCATTACCTGCACACAGGATCAGCACAGGGAATCATTCACCGTGATGTCAAAACAACCAATATTTTGCTCGACGAGAACTTCACTGCAAAAGTTGCGGATTTCGGGCTGTCAAAGGATGCGCCAATGGGGCAGGGACATGTTAGTACTGCAGTGAAGGGGAGTTTTGGATACTTGGATCCAGAGTACTTTAGGAGGCAACAGTTGACAGAGAAATCAGATGTTTATTCGTTTGGGGTTGTTCTACTTGAGGCTTTGTGTGCAAGGCCGGCAATCAACCCATCTTTGACAAGGGAACAAGTGAACTTGGCTGATTGGGCAATGCAGAACAAGAGAAAAGGGACATTGGAAAAGATCATGGATCCTCTTCTAGTTGGAGCCATAAGTCCTGATTCTATGAAGAAGTTTGCAGAAGCAGCAGAGAAGTGTCTTGCAGAACATGGTGTCGATAGGCCAAGCATGGGGGATGTGCTGTGGAATTTGGAGTATGCATTACAACTTCAAGAGTCATTCTCAAAAGGCAAGGCAGAAGAAGAAACCAAACCCGAAGCTACAGCACCTGTCACCCCCACCTCCGCTACTCCTACCGCTGTCGACGATTCGACAGATGCACCAAACTCCGACAACTGCCCTGCTGCCGTGAAGCCAGAACAGAACAGGCAACCGGCAGAGGTCCAAAACCAAACCATTGATGATCACTCCGGCAGTGCAATGTTTGCTCATTTTTCTAATCTCAACGGTAGATGA 2646 45.77 MEIKEKKRISSFSSSPFMSSSSLMAFLLVFLCFILYAPIAAFALGPGSGVSFIPKDNFLLDCGATKELGALPDGRVFKTDDQSLQFLDAKDEMVAAAPPDTNAPSPVDLTARVFLQEAAYHFQMAEPGWHWLRLHFLPVKTNDFDLLEAKFSVVTEKYVLLHSFNINNESTFVLKEFLLNITEPKLSIKFLPMKNSAAFISAIEVVSAPEGMISDSNMELSPVGMVDGLSKYAFQTVYRLNMGGPVITPRNDTLGRTWERDEAYRKPLAAGKNVVVQTNSIKYQDGLEEIGKLIAPPSVYASAVQMGDVQSMEPNFNITWRFEADPSFGYLIRFHFCDIVSKVLNNLYFNVYVNGKAAITNLDLSHKLGVLATAYYQDVVINSSFIVEGLTIQIGPANVDTGDANAILNGLEVMKISNSVNSLDGEFGVDGKSANGSNRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMTSKTSYGSHKTNTGLGLGRFFTLAELQEATKNFDSNAIIGVGGFGNVYLGVIDEGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDHLYGKNLSPLSWKQRLEICIGSARGLHYLHTGSAQGIIHRDVKTTNILLDENFTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPSLTREQVNLADWAMQNKRKGTLEKIMDPLLVGAISPDSMKKFAEAAEKCLAEHGVDRPSMGDVLWNLEYALQLQESFSKGKAEEETKPEATAPVTPTSATPTAVDDSTDAPNSDNCPAAVKPEQNRQPAEVQNQTIDDHSGSAMFAHFSNLNGR 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3504747 3507392 + CmaCh08G006240.1 Cma08g00624 299319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00624 881 CDD STKc_IRAK 531 795 - -
Cma08g00624 881 ProSitePatterns Protein kinases ATP-binding region signature. 531 553 IPR017441 GO:0005524
Cma08g00624 881 PANTHER BNAC03G60370D PROTEIN 42 852 - -
Cma08g00624 881 SMART serkin_6 525 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00624 881 MobiDBLite consensus disorder prediction 818 868 - -
Cma08g00624 881 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Cma08g00624 881 PANTHER OS07G0166700 PROTEIN 42 852 IPR045272 GO:0004714|GO:0006468
Cma08g00624 881 Gene3D Transferase(Phosphotransferase) domain 1 601 819 - -
Cma08g00624 881 SUPERFAMILY Protein kinase-like (PK-like) 510 792 IPR011009 -
Cma08g00624 881 MobiDBLite consensus disorder prediction 805 868 - -
Cma08g00624 881 Pfam Malectin-like domain 60 416 IPR024788 -
Cma08g00624 881 Pfam Protein tyrosine and serine/threonine kinase 529 738 IPR001245 GO:0004672|GO:0006468
Cma08g00624 881 ProSiteProfiles Protein kinase domain profile. 525 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00624 881 Gene3D - 57 209 - -
Cma08g00624 881 Gene3D - 232 418 - -
Cma08g00624 881 Gene3D Phosphorylase Kinase; domain 1 491 600 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00624 Cma-Chr8:3504747 Cma17g00823 Cma-Chr17:6448674 0 dispersed
Cma08g00624 Cma-Chr8:3504747 Cma01g01189 Cma-Chr1:8611981 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68754 PF12819 Malectin_like 9.40E-38 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00624 - - cpep:111778821 1653.26