Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00675 ATGACATATTTTCCTAGTTTAAGCAATCCAAGAGAGTCCACGTTGGGTGACCAAAAACTTGGTTCTTCTTGCCAAGAACAGCTGCTCTGTTCTGGGAATTTTATGATGTTTATGAATCATCAAGACCCTTCTTGCGGTGATTACTCTGAGATTTTTTCTGGGGTTTCTTCAAATTATGTTGAATCTGTGGGAGATAGAAGTAATGGTGAAATGGGTTTCATTCCACCGGTCGTGGGAATTTTAGATCACTCAAATTTTCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCACCTTCTGTTGTTTCATTGCCTTCATTTCCTTCCCAATATCAGACCCGTGCCTTGCCTTCTTCATTTATCTGTGCACCTCCTTCGATCTTTGAGCAAAGGTCGAATCCGAAACTGTGTATGTCTGATGCGAAAAATGGTATGTATATGTCGGTTGCTGCTGCAAATTTGGTTTCGAATTCGATATACGTTGAAGCTGCACAGCAGTTGCTTGATGAAGTGGTTAGCATTGGGGATGCTTTGAAGGAGCTGAAGTCTAAGAAACTCAAAGGTTCTAATGATCTGACTGGGGAGATGTGTTCCGATGCGACGGATTCGTTGCTAGTGAATTCGTCGCTCGTGAATTTGTCCAGTGATTTATCGCCTGCCGAACGACAGGACTTGAAGAACAAAAACTCGAAGCTGTTGTCCTTGTTGGGTGAGGTCGATCGAAGATACAAGCAATATTACCAACAAGAGCAGTTCTTAGTGTCGTCTTTCGACCTGGTAGCAGGCCGTGGGGCTGCAGAGTTCTACACTGCACTTGCACACTGGACTATTTCGTGCCACTTTCGACGCCTGCGAGATGCGATCAATGCACAGATTAAGACCACAAGAAGAACCTTAGGGGAGCAAGATGCTTCACATTCTGGCCAAGAGGGCATTCCTCGTCTCCGCTTTGTCGATCAGCAGCTCAGGCAACAGAGAACCCTTCAGCAGCTCGGCGTCACGTCACATAGTTGGAGGCCTCAACGAGGACTCCCGGAAAGCTCCGTGTCGATACTTCGTGCTTGGCTGTTTGAACACTTCCTCCATCCATATCCCAAAGATTCAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACTCGAAACCAAGTTGCAAACTGGTTCATAAACGCCCGTGTTCGACTATGGAAACCGATGGTCGAAGAGATGTACAAAGAAGAGTTTGGAGACACGAACATGGACATCAAATCCTCACCAGAAAACACATCCAAACCACCATGGAACAACAACTCACTCTTCTCCGAGGACAGGTCAGGAGACAAGTTACACGACAACACGAAATCAGCAGCCAGCAACAACGAGCGAGTTCTCTACGGCCCATGTTCTACCGACGACATGATCAAGCCGAGTAACTTCTCAGTCGACGGAGACGTTTCACTAGCATTGGAGCTGAAGCATTGCGAAGGCGAAGAATTCGGCATATTCGGAAGTAGTAACAATAGAATCGGTTCTATAGAGCTTGAGACACAAGATTTCCAATGCAGGCTCCCAAGCTCAAATATGTTGCATGATTTTGTAGTTTGA 1587 45.87 MTYFPSLSNPRESTLGDQKLGSSCQEQLLCSGNFMMFMNHQDPSCGDYSEIFSGVSSNYVESVGDRSNGEMGFIPPVVGILDHSNFQCQGVSLSLSTHSPSVVSLPSFPSQYQTRALPSSFICAPPSIFEQRSNPKLCMSDAKNGMYMSVAAANLVSNSIYVEAAQQLLDEVVSIGDALKELKSKKLKGSNDLTGEMCSDATDSLLVNSSLVNLSSDLSPAERQDLKNKNSKLLSLLGEVDRRYKQYYQQEQFLVSSFDLVAGRGAAEFYTALAHWTISCHFRRLRDAINAQIKTTRRTLGEQDASHSGQEGIPRLRFVDQQLRQQRTLQQLGVTSHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDTNMDIKSSPENTSKPPWNNNSLFSEDRSGDKLHDNTKSAASNNERVLYGPCSTDDMIKPSNFSVDGDVSLALELKHCEGEEFGIFGSSNNRIGSIELETQDFQCRLPSSNMLHDFVV 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4153128 4156405 + CmaCh08G006750.1 Cma08g00675 299370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00675 528 SMART prehox3 150 291 IPR006563 -
Cma08g00675 528 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 27 456 - -
Cma08g00675 528 SMART HOX_1 339 403 IPR001356 GO:0003677
Cma08g00675 528 Pfam Associated with HOX 156 289 IPR006563 -
Cma08g00675 528 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 27 456 - -
Cma08g00675 528 SUPERFAMILY Homeodomain-like 340 407 IPR009057 -
Cma08g00675 528 Pfam Homeobox KN domain 356 395 IPR008422 GO:0003677|GO:0006355
Cma08g00675 528 CDD homeodomain 339 400 IPR001356 GO:0003677
Cma08g00675 528 Gene3D - 334 413 - -
Cma08g00675 528 MobiDBLite consensus disorder prediction 412 450 - -
Cma08g00675 528 MobiDBLite consensus disorder prediction 415 436 - -
Cma08g00675 528 Coils Coil 165 185 - -
Cma08g00675 528 ProSiteProfiles 'Homeobox' domain profile. 336 399 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00675 Cma-Chr8:4153128 Cma20g00823 Cma-Chr20:3913634 1.75E-102 dispersed
Cma17g00850 Cma-Chr17:6603665 Cma08g00675 Cma-Chr8:4153128 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35514 PF07526 POX 2.70E-37 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00675 - - cmax:111494608 1020.76