Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00678 ATGATTCGAGTTCACTGCGTCTCTCTGCAAATCCAAGTGAGAATGGAAGGTCCTTCGCTTCACGGTACGCTTCACGCCACAATCTATGAAGTCGACAGGTTGCATACTGGTGGTGGATCCAACGTCTTCAGCAAGTTAATGCAAAACCTTGAGGAGGTGGTTGGAATTGGCAAAGGAGTTACCAGACTATATGCAACTATAGATTTAGAAAAGGCTAGAGTCGGGAGGACACGAAAATTGGAAAATGAACCCCATAACCCTAGATGGTATGAATCTTTTCACGTCTACTGTGCCCATAGGGCATCAAATGTTATCTTCACCGTGAAGGATGATAACCCTATTGGTGCAAGTTTGATTGGACGTGCATATGTACCGGTGGAAGACATCATTGATGGGGAGGAAGTTGACAGGTGGGTTCCACTCTTAGATGAAGAAAAAAATCCAATTGAAGGAGATTCTAAGATCCGTGTCAAGCTTCAATACTTCAGAGTTACTAAAGATCGCAATTGGGGTCGTGGTATAAGAAGCCACAAATTTCCTGGAGTCCCCTACACATATTACCCACAGAGACAAGGTTGTAAAGTCTCTTTGTATCAAGATGCTCATATCCCTGATAATTTTGTTCCTAAAATACCTCTTGCTGGAGGAAAGAATTATGCTCCGGCCAGATGTTGGGAAGATATTTTCGACGCTATACAAAATGCAAAACACATGATCTACATCACAGGATGGTCTGTTTATACAGAAATCGCCTTGATAAGAGACTCAAGGAGGCCAAAGCCCGGAGGAGACACCATGCTTGGTGAGCTGCTTAAGAAGAAAGCAAGTGAAGGCGTCAGAGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTCGGTTTACTAAAGAAGGATGGTCTGATGGCTACTCATGATGAAGAAACTGAACAGTTCTTTCGAGATACTGATGTCCACTGTATCTTGTGCCCTCGTAATCCTGACGATGGTGGAAGCATTGTTCAAGACCTACAAATCTCTACAATGTTCACTCACCATCAGAAGATTGTTGTTGTGGATAGCCCAATGCCAAGTGGAGATTCGGATAAGAGGAGAATTGTGAGTTTCGTTGGTGGCCTTGATCTTTGTGATGGCAGGTATGACACACCCTTTCATTCCCTCTTCAGGACATTGGATACTGCACATCACGATGATTTCCATCAACCCAACTTTCCTGGTGCATTAATAACAAAAGGTGGACCAAGGGAACCTTGGCACGACATCCATTCCCGACTTGAAGGGCCCATTGCCTGGGATGTCTTGTTCAATTTTGAGCAAAGGTGGAAGAAACAAGGTGGGAAGGATGTCCTTGTGCAGCTTCGGGAGCTTGATGAAATAATTATTCCTCCATCTCCTGTTATGTACCCAGATGACCATGAAACCTGGAATGTTCAATTGTTTAGATCTATAGATGGTGGGGCAGCCTTTGGCTTTCCTGAGACCCCCGAAGATGCTGCTAGAGCTGGGCTAGTTAGCGGGAAAGATAACATTATTGATCGAAGTATTCAAGACGCTTACATTAATGCTATTCGGCGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGAGGATATCAAGCCTGAGGATATTGGAGCCTTGCACTGTATCCCAAGAGAGCTTTCCCTTAAGATCGTAAGTAAGATTGCAGCAGGAGAAAGGTTCACTGTCTATGTAGTTGTCCCAATGTGGCCAGAAGGAATACCAGAAAGTGGATCGGTTCAGGCAATATTAGATTGGCAGAGGAGGACATTTGAAATGATGTATAAAGACGTGATTCAGGCTCTTAGAGATAACGGTATCGAGGAGGACCCCCGTAACTACTTGACATTCTTCTGTCTTGGCAATCGGGAAGTCAAGAGGTCTGGAGAATATGAACCTCCAGAGGCACCAGAGGAGGATTCCGATTACATGAAAGCCCAGCAGGCCAGGCGTTTCATGATTTATGTTCACACCAAGATGATGATTGTTGATGATGAGTACATAATTGTTGGATCGGCCAATATCAACCAGAGATCCATGGATGGAGCAAGGGACTCTGAGATAGCTATGGGCGGTTATCAGCCATATCATCTGTCAACCCATGAACCTGCACGTGGTCAAGTTCACGGATTCCGAATGGCCCTATGGTATGAACACCTTGGTATGCTTGATGAATCTTTCCTTCGGCCAGAAAGCGAAGAATGTGCTTCGAAGGTTAACAGAATTGCTGATAAGTATTGGGATCTGTATTCAAGTGAAGCACTTGAGAGGGACTTGCCCGGTCACCTCCTCCGCTATCCCATTGGCATAAGCAGTGAAGGTAATGTGACAGAGCTCCCAGGATTTGAGTTCTTCCCCGACACCAAAGCACGTATACTCGGAACCAAATCTGACTACCTCCCTCCCATCCTCACTACTTAG 2469 44.67 MIRVHCVSLQIQVRMEGPSLHGTLHATIYEVDRLHTGGGSNVFSKLMQNLEEVVGIGKGVTRLYATIDLEKARVGRTRKLENEPHNPRWYESFHVYCAHRASNVIFTVKDDNPIGASLIGRAYVPVEDIIDGEEVDRWVPLLDEEKNPIEGDSKIRVKLQYFRVTKDRNWGRGIRSHKFPGVPYTYYPQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYAPARCWEDIFDAIQNAKHMIYITGWSVYTEIALIRDSRRPKPGGDTMLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETEQFFRDTDVHCILCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPSGDSDKRRIVSFVGGLDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGALITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLVQLRELDEIIIPPSPVMYPDDHETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPEDIKPEDIGALHCIPRELSLKIVSKIAAGERFTVYVVVPMWPEGIPESGSVQAILDWQRRTFEMMYKDVIQALRDNGIEEDPRNYLTFFCLGNREVKRSGEYEPPEAPEEDSDYMKAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGGYQPYHLSTHEPARGQVHGFRMALWYEHLGMLDESFLRPESEECASKVNRIADKYWDLYSSEALERDLPGHLLRYPIGISSEGNVTELPGFEFFPDTKARILGTKSDYLPPILTT 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4167206 4172431 + CmaCh08G006780.1 Cma08g00678 299373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00678 822 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 668 695 IPR001736 GO:0003824
Cma08g00678 822 PANTHER PHOSPHOLIPASE D ALPHA 1 20 822 - -
Cma08g00678 822 Gene3D Endonuclease Chain A 494 711 - -
Cma08g00678 822 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 340 378 IPR001736 GO:0003824
Cma08g00678 822 ProSiteProfiles C2 domain profile. 5 139 IPR000008 -
Cma08g00678 822 PANTHER PHOSPHOLIPASE D 20 822 IPR015679 -
Cma08g00678 822 Gene3D Endonuclease Chain A 214 456 - -
Cma08g00678 822 SUPERFAMILY Phospholipase D/nuclease 456 751 - -
Cma08g00678 822 CDD C2_plant_PLD 20 162 - -
Cma08g00678 822 Pfam Phospholipase D C terminal 740 812 IPR024632 -
Cma08g00678 822 Pfam C2 domain 50 141 IPR000008 -
Cma08g00678 822 Pfam Phospholipase D Active site motif 340 378 IPR001736 GO:0003824
Cma08g00678 822 Pfam Phospholipase D Active site motif 669 695 IPR001736 GO:0003824
Cma08g00678 822 SMART pld_4 668 695 IPR001736 GO:0003824
Cma08g00678 822 SMART pld_4 340 378 IPR001736 GO:0003824
Cma08g00678 822 PIRSF PLD_plant 10 822 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cma08g00678 822 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 19 163 IPR035892 -
Cma08g00678 822 SMART C2_3c 23 138 IPR000008 -
Cma08g00678 822 Gene3D C2 domain 21 170 IPR035892 -
Cma08g00678 822 SUPERFAMILY Phospholipase D/nuclease 165 455 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00139 Cma08g00678 CCT
Cma01g00139 Cma08g00678 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00139 Cma-Chr1:625326 Cma08g00678 Cma-Chr8:4167206 0 dispersed
Cma08g00678 Cma-Chr8:4167206 Cma17g00003 Cma-Chr17:12987 0 dispersed
Cma01g00068 Cma-Chr1:294236 Cma08g00678 Cma-Chr8:4167206 0 transposed
Cma05g00383 Cma-Chr5:1686515 Cma08g00678 Cma-Chr8:4167206 0 transposed
Cma17g00856 Cma-Chr17:6619325 Cma08g00678 Cma-Chr8:4167206 7.29E-08 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00678 K01115 - csv:101206113 1566.21