Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00684 ATGGGAATGAACTCCAATCGAGTTGAGAGCTTGGAATGTCGTGAAACGGTGTTGAGAATTCCGCCGGAGGAAATGTCGGCGCCTCCGCAACACACGGAGGAGATTCACAAAGTCTGCTTGCCGCCTACGCAGACTACACTTCAGAAACTCAAGCACAAGCTCTCCGAGGTGTTCTTCCCGGATGATCCGTTTTACAGATTCAAGAACCAAACGTGGTTCAGAAAACTGCTTTTAGGCCTTCAATTTCTGTTTCCTATTTTCCAATGGGGACCTGATTATACCCTAGCTCTTTTCAAGTCTGACATCGTTTCTGGTCTCACAATTGCTAGCCTTGCTATTCCTCAGGGAATAAGTTATGCGAAACTTGCGAATTTGCCGCCAATCATCGGTTTATATTCAAGCTTTGTGCCTCCACTGATATATTCTGTTCTCGGAAGCTCTAGACATCTTGCTGTTGGTCCTGTTTCTATCGCCTCTTTGGTCATGGGATCGATGATCACTGAGGCAGTCTCTTTTAATGAACAGCCAACTCTCTTTCTTAAGTTAGCTTTTACAGCCACCTTCTTTGCTGGTGTATTCCAAGCATCTTTAGGTTTGTTAAGGCTAGGCTTTGTCATTGATTTTCTGTCAAAGGCTACTTTAGTTGGGTTTATGGCTGGTGCAGCAGTCATTGTGTCATTGCAACAGCTCAAAGGGTTGCTTGGAATCATCCATTTCACCAACAAAATGCAATTTATTCCTGTCATGTCGTCTGTCTTTCACCACAAAGATGAGTGGTCTTGGCAAACTATTGTTTTAGGCTCCATTTTCCTACTCTTTCTTCTGGGAACGAGGCATATAAGTATCAAGAAACCAAAGCTTTTCTGGATTTCAGCAGCTGCTCCACTGACATCAGTTATATTGTCCACTATTTTAGTCTTCCTTCTTAGAGAAAAAGTTCCTGGAATCTCAGTGATTGGTCATTTGCCAAAGGGCATCAATCCACCATCTTTGAACATGCTGTACTTTACTGGTCCTCAGTTGGCACTTGCCATAAAAACTGGCATTATAACTGGAATTCTCTCGCTGACTGAAGGAATTGCCGTAGGAAGGACGTTTGCTGGTTTGAAAAACTATCAAGTGGATGGGAATAAAGAAATGATGGCCATTGGTTTTATGAACATGGCTGGATCTTGTTCTTCCTGCTATGTTACAACAGGGTCATTTTCTCGGTCGGCTGTGAATTATAATGCCGGGGCACAAACAGCAGTCTCAAATGTAGTGATGTCTGCAACCGTGCTCATAACGTTGTTGTTTCTGATGCCACTGTTCCATTATACTCCAAATTTCATCCTAGCAGCCATCATTATAACAGCAGTAATTGGGCTCATTGATTACCAAGCAGCCTGTAGGCTATGGAAAGTTGACAAGCTTGATTTCGTAGCTTGTGTTTGTTCTTTCTTCGGCGTTCTTTTCATCTCAGTTCCGTTGGGTCTTGCCATTGCAGTTGGAGTATCTATTTTCAAGATTCTTCTGCATGTCACGAGGCCGAACACCATGGTCTTGGGGAATATTTCTGGGACTCAAATATTCCAAAACATTGACCGATACCGAGAAGCCTCAAGGGTGCCTTCGTTCCTCATTCTTGCCATTGAATCTCCAATCTACTTTGCAAACTCGACATACCTACAAGAAAGGATTCTAAGGTGGATTAGGGAAGAGGAAGAGAGAATAAAAGCGACGAACGACAGTCCACTGAAATGTGTAATCCTAGACATGACAGCTGTGACATCCATAGACACAAGTGGTATAGAAGCAGTATGTGAAATTAGGAAGATCTTGATGCAAAAATCACTACAGTTTGTTCTTGCAAATCCAGTTGCAAGCGTGATGGAAAAACTGTATAAATCAAAGGCCTTGGAGCAATTCGAGTTTAACGGTCTCTACCTCTCAGTCGGAGAAGCTGTGATGGACATTTCTTCTTTGTGGAAGAGGCAGCCATAA 1983 43.02 MGMNSNRVESLECRETVLRIPPEEMSAPPQHTEEIHKVCLPPTQTTLQKLKHKLSEVFFPDDPFYRFKNQTWFRKLLLGLQFLFPIFQWGPDYTLALFKSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYSVLGSSRHLAVGPVSIASLVMGSMITEAVSFNEQPTLFLKLAFTATFFAGVFQASLGLLRLGFVIDFLSKATLVGFMAGAAVIVSLQQLKGLLGIIHFTNKMQFIPVMSSVFHHKDEWSWQTIVLGSIFLLFLLGTRHISIKKPKLFWISAAAPLTSVILSTILVFLLREKVPGISVIGHLPKGINPPSLNMLYFTGPQLALAIKTGIITGILSLTEGIAVGRTFAGLKNYQVDGNKEMMAIGFMNMAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNVVMSATVLITLLFLMPLFHYTPNFILAAIIITAVIGLIDYQAACRLWKVDKLDFVACVCSFFGVLFISVPLGLAIAVGVSIFKILLHVTRPNTMVLGNISGTQIFQNIDRYREASRVPSFLILAIESPIYFANSTYLQERILRWIREEEERIKATNDSPLKCVILDMTAVTSIDTSGIEAVCEIRKILMQKSLQFVLANPVASVMEKLYKSKALEQFEFNGLYLSVGEAVMDISSLWKRQP 660
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4212615 4216547 + CmaCh08G006840.1 Cma08g00684 299379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00684 660 ProSitePatterns SLC26A transporters signature. 127 148 IPR018045 GO:0008271|GO:0008272
Cma08g00684 660 PANTHER SULFATE TRANSPORTER 3.4-RELATED 28 659 IPR030317 -
Cma08g00684 660 PANTHER SULFATE TRANSPORTER 28 659 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma08g00684 660 Gene3D STAS domain 509 654 IPR036513 -
Cma08g00684 660 SUPERFAMILY SpoIIaa-like 534 649 IPR036513 -
Cma08g00684 660 ProSiteProfiles STAS domain profile. 529 652 IPR002645 -
Cma08g00684 660 Pfam STAS domain 530 648 IPR002645 -
Cma08g00684 660 Pfam Sulfate permease family 98 477 IPR011547 GO:0016021
Cma08g00684 660 TIGRFAM sulP: sulfate permease 85 648 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cma08g00684 660 CDD STAS_SulP_like_sulfate_transporter 530 645 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00684 Cma17g00816 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01377 Cma-Chr6:8979400 Cma08g00684 Cma-Chr8:4212615 0 dispersed
Cma08g00327 Cma-Chr8:1868717 Cma08g00684 Cma-Chr8:4212615 0 dispersed
Cma08g00684 Cma-Chr8:4212615 Cma17g01201 Cma-Chr17:8290197 0 dispersed
Cma04g00027 Cma-Chr4:128255 Cma08g00684 Cma-Chr8:4212615 0 transposed
Cma10g00603 Cma-Chr10:2788367 Cma08g00684 Cma-Chr8:4212615 0 wgd
Cma11g00593 Cma-Chr11:2835420 Cma08g00684 Cma-Chr8:4212615 0 wgd
Cma17g00816 Cma-Chr17:6397306 Cma08g00684 Cma-Chr8:4212615 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00684 K17471 - csv:101203079 1167.14