Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00693 | ATGGATTTCTGGCCGGAGTTTCTTGCAACCAGTTGGGGTAAAGAATTTGTCGCCGGTGGATTTGGTGGCATTGCTGGTATAGTCTCCGGCTACCCACTTGATACTCTTCGAATCAGGCAACAGCGATCCATTTCTGGTTCTGCTTTCAAAATCTTTCGTGATATTGTTGCAAACCATGGCCCTGCTGGTCTTTACAGAGGCATGGCTGCTCCCTTGGCCTCTGTCACTTTCCAGAATGCTGCCGTGTTTCAAATCTACGCCGTTCTTTCTCGGGCATTCAACTTCTCCCAATCCAACGGTGACCCTCCGAGCTATAAGGCTGTGGCTTTTGGAGGATTTGTCACCGGAGCTCTTCAGAGCTTCATCCTGTCGCCGGTGGAGCTGGTGAAAATCCGCCTGCAATTGCAAAGTTCTTCTTCTAACAAAGGCCCTGTGAGCGTAGCCAAACGCATCTGCAAAACAGAAGGATTGAGAGGGATTTACAGAGGACTTACCATAACCATGCTCAGAGATGCACCGGCACATGGAATCTATTTCTGGACATATGAGTTCATGAGAGAGCAGTTTCATCCTGGCTGCCGGAAGACCGGCCAAGAGAGTGTCAGCACAATGCTGTTTGCCGGAGGGCTCGCCGGAGTTGGCAGCTGGGTTGTCTGTTATCCCTTAGATGTGTTGAAGACAAGAATTCAGGGTGAGACACAAAGCTCATCTGGAAAATATAATGGAATTGTTGATTGTCTTGGCAAGAGTGTAAGAGAAGAGGGTTACAGAGTGCTGTGGCGAGGGCTGGGGACTGCGGTGGCTAGAGCATTTGTGGTTAATGGGGCCGTCTTTGCTGCATATGAGAGTACTTTGAGGTGTTTGTTTAGCAATCAAGCTCTCTGA | 885 | 49.27 | MDFWPEFLATSWGKEFVAGGFGGIAGIVSGYPLDTLRIRQQRSISGSAFKIFRDIVANHGPAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNFSQSNGDPPSYKAVAFGGFVTGALQSFILSPVELVKIRLQLQSSSSNKGPVSVAKRICKTEGLRGIYRGLTITMLRDAPAHGIYFWTYEFMREQFHPGCRKTGQESVSTMLFAGGLAGVGSWVVCYPLDVLKTRIQGETQSSSGKYNGIVDCLGKSVREEGYRVLWRGLGTAVARAFVVNGAVFAAYESTLRCLFSNQAL | 294 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4261140 | 4262296 | + | CmaCh08G006930.1 | Cma08g00693 | 299388 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00693 | 294 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 13 | 92 | IPR018108 | - | |
Cma08g00693 | 294 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 199 | 287 | IPR018108 | - | |
Cma08g00693 | 294 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 103 | 188 | IPR018108 | - | |
Cma08g00693 | 294 | SUPERFAMILY | Mitochondrial carrier | 11 | 282 | IPR023395 | - | |
Cma08g00693 | 294 | Pfam | Mitochondrial carrier protein | 109 | 189 | IPR018108 | - | |
Cma08g00693 | 294 | Pfam | Mitochondrial carrier protein | 200 | 291 | IPR018108 | - | |
Cma08g00693 | 294 | Pfam | Mitochondrial carrier protein | 11 | 94 | IPR018108 | - | |
Cma08g00693 | 294 | PRINTS | Mitochondrial carrier protein signature | 15 | 28 | IPR002067 | GO:0055085 | |
Cma08g00693 | 294 | PRINTS | Mitochondrial carrier protein signature | 118 | 136 | IPR002067 | GO:0055085 | |
Cma08g00693 | 294 | PRINTS | Mitochondrial carrier protein signature | 161 | 179 | IPR002067 | GO:0055085 | |
Cma08g00693 | 294 | PRINTS | Mitochondrial carrier protein signature | 208 | 230 | IPR002067 | GO:0055085 | |
Cma08g00693 | 294 | PANTHER | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 1 | 290 | - | - | |
Cma08g00693 | 294 | PANTHER | CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN | 1 | 290 | - | - | |
Cma08g00693 | 294 | Gene3D | Mitochondrial carrier domain | 14 | 293 | IPR023395 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma08g00693 | Cma14g01309 | CCT | |
Cma01g00111 | Cma08g00693 | CCT | |
Cma08g00693 | Cma17g00803 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00693 | Cma-Chr8:4261140 | Cma16g01153 | Cma-Chr16:8867734 | 6.00E-47 | dispersed | |
Cma01g00111 | Cma-Chr1:504236 | Cma08g00693 | Cma-Chr8:4261140 | 6.89E-150 | wgd | |
Cma14g01309 | Cma-Chr14:10305977 | Cma08g00693 | Cma-Chr8:4261140 | 3.93E-149 | wgd | |
Cma17g00803 | Cma-Chr17:6339761 | Cma08g00693 | Cma-Chr8:4261140 | 9.36E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00693 | K15109 | - | csv:101222165 | 489.96 |