Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00693 ATGGATTTCTGGCCGGAGTTTCTTGCAACCAGTTGGGGTAAAGAATTTGTCGCCGGTGGATTTGGTGGCATTGCTGGTATAGTCTCCGGCTACCCACTTGATACTCTTCGAATCAGGCAACAGCGATCCATTTCTGGTTCTGCTTTCAAAATCTTTCGTGATATTGTTGCAAACCATGGCCCTGCTGGTCTTTACAGAGGCATGGCTGCTCCCTTGGCCTCTGTCACTTTCCAGAATGCTGCCGTGTTTCAAATCTACGCCGTTCTTTCTCGGGCATTCAACTTCTCCCAATCCAACGGTGACCCTCCGAGCTATAAGGCTGTGGCTTTTGGAGGATTTGTCACCGGAGCTCTTCAGAGCTTCATCCTGTCGCCGGTGGAGCTGGTGAAAATCCGCCTGCAATTGCAAAGTTCTTCTTCTAACAAAGGCCCTGTGAGCGTAGCCAAACGCATCTGCAAAACAGAAGGATTGAGAGGGATTTACAGAGGACTTACCATAACCATGCTCAGAGATGCACCGGCACATGGAATCTATTTCTGGACATATGAGTTCATGAGAGAGCAGTTTCATCCTGGCTGCCGGAAGACCGGCCAAGAGAGTGTCAGCACAATGCTGTTTGCCGGAGGGCTCGCCGGAGTTGGCAGCTGGGTTGTCTGTTATCCCTTAGATGTGTTGAAGACAAGAATTCAGGGTGAGACACAAAGCTCATCTGGAAAATATAATGGAATTGTTGATTGTCTTGGCAAGAGTGTAAGAGAAGAGGGTTACAGAGTGCTGTGGCGAGGGCTGGGGACTGCGGTGGCTAGAGCATTTGTGGTTAATGGGGCCGTCTTTGCTGCATATGAGAGTACTTTGAGGTGTTTGTTTAGCAATCAAGCTCTCTGA 885 49.27 MDFWPEFLATSWGKEFVAGGFGGIAGIVSGYPLDTLRIRQQRSISGSAFKIFRDIVANHGPAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNFSQSNGDPPSYKAVAFGGFVTGALQSFILSPVELVKIRLQLQSSSSNKGPVSVAKRICKTEGLRGIYRGLTITMLRDAPAHGIYFWTYEFMREQFHPGCRKTGQESVSTMLFAGGLAGVGSWVVCYPLDVLKTRIQGETQSSSGKYNGIVDCLGKSVREEGYRVLWRGLGTAVARAFVVNGAVFAAYESTLRCLFSNQAL 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4261140 4262296 + CmaCh08G006930.1 Cma08g00693 299388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00693 294 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
Cma08g00693 294 ProSiteProfiles Solute carrier (Solcar) repeat profile. 199 287 IPR018108 -
Cma08g00693 294 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 188 IPR018108 -
Cma08g00693 294 SUPERFAMILY Mitochondrial carrier 11 282 IPR023395 -
Cma08g00693 294 Pfam Mitochondrial carrier protein 109 189 IPR018108 -
Cma08g00693 294 Pfam Mitochondrial carrier protein 200 291 IPR018108 -
Cma08g00693 294 Pfam Mitochondrial carrier protein 11 94 IPR018108 -
Cma08g00693 294 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Cma08g00693 294 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Cma08g00693 294 PRINTS Mitochondrial carrier protein signature 161 179 IPR002067 GO:0055085
Cma08g00693 294 PRINTS Mitochondrial carrier protein signature 208 230 IPR002067 GO:0055085
Cma08g00693 294 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 290 - -
Cma08g00693 294 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 290 - -
Cma08g00693 294 Gene3D Mitochondrial carrier domain 14 293 IPR023395 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00693 Cma14g01309 CCT
Cma01g00111 Cma08g00693 CCT
Cma08g00693 Cma17g00803 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00693 Cma-Chr8:4261140 Cma16g01153 Cma-Chr16:8867734 6.00E-47 dispersed
Cma01g00111 Cma-Chr1:504236 Cma08g00693 Cma-Chr8:4261140 6.89E-150 wgd
Cma14g01309 Cma-Chr14:10305977 Cma08g00693 Cma-Chr8:4261140 3.93E-149 wgd
Cma17g00803 Cma-Chr17:6339761 Cma08g00693 Cma-Chr8:4261140 9.36E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00693 K15109 - csv:101222165 489.96