Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00719 | ATGGCTTGGTTCACCATTGGAAGCTTCCAAGATTCCTTCAGCTTGCGCTCTTGCAAGGCGTATCTTGCTGAGTTCATCTCCACCTTGCTCTTCGTTTTCGCCGGCGTCGGTTCCGCCATTGCCTACGATAAAATAACATCCTCTGCAGCTTTAGACCCAGCGGGGCTGGTGGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCTGTCGGAGCCAACATCTCCGGTGGCCATGTCAACCCAGCGGTGACATTCGGCCTTCTTCTTGGTGACCAAATCAGCCTAATTACGACCATATTTTACTGGATTGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACTGGCGGCCTGGCAGTTCCGGTCCACAGCGTGGCGACCGGCATCGGAGCAGCGGAAGGAGTTGTGATGGAAATTGTCATCACATTCGGTCTGGTTTACACGGTCTATGCGACGGCAGCCGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCAATTGCCATCGGATTCATCGTCGGAGCAAACATTTTGGCAGCCGGACCGTTTTCCGGCGGATCGATGAACCCGGCCCGGTCATTTGGACCGGCGGTGGTCAGTGGGGACTTTCACGACAACTGGATTTACTGGGTTGGGCCACTCGTTGGCGGTGGCTTGGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAGCGATTACTAA | 747 | 54.22 | MAWFTIGSFQDSFSLRSCKAYLAEFISTLLFVFAGVGSAIAYDKITSSAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVATGIGAAEGVVMEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPSDY | 248 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 4353546 | 4354905 | - | CmaCh08G007190.1 | Cma08g00719 | 299414 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00719 | 248 | PANTHER | MIP PROTEIN | 1 | 248 | - | - | |
Cma08g00719 | 248 | SUPERFAMILY | Aquaporin-like | 14 | 242 | IPR023271 | - | |
Cma08g00719 | 248 | Pfam | Major intrinsic protein | 15 | 232 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma08g00719 | 248 | TIGRFAM | MIP: MIP family channel proteins | 23 | 232 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma08g00719 | 248 | ProSitePatterns | MIP family signature. | 81 | 89 | IPR022357 | - | |
Cma08g00719 | 248 | Gene3D | Glycerol uptake facilitator protein. | 2 | 240 | IPR023271 | - | |
Cma08g00719 | 248 | PRINTS | Major intrinsic protein family signature | 19 | 38 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma08g00719 | 248 | PRINTS | Major intrinsic protein family signature | 63 | 87 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma08g00719 | 248 | PRINTS | Major intrinsic protein family signature | 100 | 119 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma08g00719 | 248 | PRINTS | Major intrinsic protein family signature | 145 | 163 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma08g00719 | 248 | PRINTS | Major intrinsic protein family signature | 178 | 200 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma08g00719 | 248 | PRINTS | Major intrinsic protein family signature | 215 | 235 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma08g00719 | 248 | PANTHER | AQUAPORIN-8 | 1 | 248 | IPR034294 | - | |
Cma08g00719 | 248 | CDD | MIP | 19 | 232 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01534 | Cma-Chr2:8729369 | Cma08g00719 | Cma-Chr8:4353546 | 4.97E-126 | dispersed | |
Cma08g00719 | Cma-Chr8:4353546 | Cma14g00234 | Cma-Chr14:1032156 | 2.00E-94 | dispersed | |
Cma08g00719 | Cma-Chr8:4353546 | Cma03g01199 | Cma-Chr3:8008162 | 1.38E-98 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00719 | K09873 | - | csv:101218611 | 462.225 |