Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00719 ATGGCTTGGTTCACCATTGGAAGCTTCCAAGATTCCTTCAGCTTGCGCTCTTGCAAGGCGTATCTTGCTGAGTTCATCTCCACCTTGCTCTTCGTTTTCGCCGGCGTCGGTTCCGCCATTGCCTACGATAAAATAACATCCTCTGCAGCTTTAGACCCAGCGGGGCTGGTGGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCTGTCGGAGCCAACATCTCCGGTGGCCATGTCAACCCAGCGGTGACATTCGGCCTTCTTCTTGGTGACCAAATCAGCCTAATTACGACCATATTTTACTGGATTGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACTGGCGGCCTGGCAGTTCCGGTCCACAGCGTGGCGACCGGCATCGGAGCAGCGGAAGGAGTTGTGATGGAAATTGTCATCACATTCGGTCTGGTTTACACGGTCTATGCGACGGCAGCCGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCAATTGCCATCGGATTCATCGTCGGAGCAAACATTTTGGCAGCCGGACCGTTTTCCGGCGGATCGATGAACCCGGCCCGGTCATTTGGACCGGCGGTGGTCAGTGGGGACTTTCACGACAACTGGATTTACTGGGTTGGGCCACTCGTTGGCGGTGGCTTGGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAGCGATTACTAA 747 54.22 MAWFTIGSFQDSFSLRSCKAYLAEFISTLLFVFAGVGSAIAYDKITSSAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVATGIGAAEGVVMEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPSDY 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4353546 4354905 - CmaCh08G007190.1 Cma08g00719 299414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00719 248 PANTHER MIP PROTEIN 1 248 - -
Cma08g00719 248 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Cma08g00719 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma08g00719 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma08g00719 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cma08g00719 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Cma08g00719 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma08g00719 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma08g00719 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma08g00719 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma08g00719 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma08g00719 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma08g00719 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Cma08g00719 248 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01534 Cma-Chr2:8729369 Cma08g00719 Cma-Chr8:4353546 4.97E-126 dispersed
Cma08g00719 Cma-Chr8:4353546 Cma14g00234 Cma-Chr14:1032156 2.00E-94 dispersed
Cma08g00719 Cma-Chr8:4353546 Cma03g01199 Cma-Chr3:8008162 1.38E-98 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00719 K09873 - csv:101218611 462.225