Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00731 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAACGGCAAATACGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTCTATCATGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGAGAGTGCCCCATTCTTTCTAATATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAATCGTCTCGGCTTCAAGCTGTGAATAGGAAGCTTACGGCCATGAATAAGCTTCTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCACAGCTGGTGTATGAGAATGGCTATTTCCGCCAGCATACTCAGAGTACGACGCTTGGAGCTAAAGACACAAATTGTGAACCGGTGGTAACTAGCGGTCAACACAATTTGACATCTCAGCATCCTCCTCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGTGGCTTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCTTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACAGCTAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTTTATGCGCCTACAACGTTGGCGCCTGCTAGGGACTTCTGGTTGTTACGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTTAAGAACACCCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAGATGTTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCTATCATTCACATTGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGTCCATTGTATGAATCGTCCACTGTTCTTGCTCAAAAGATGACTATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCGAATGTAACAGGCTGGGGTAGACGCCCTGCAGCCTTACGTGCACTTGGTCAAAGGCTAACCCGGGGTTTTAACGAGGCACTTAATGGGTTTAACGACGAAGGGTGGTCTGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTCGTAAATTCATCTCCTGACAAGCTAATGGGATTGAACATTTCATTTGCAAATGGATTTTCTTCCATCAGTAACGCAGTTTTATGTGCTAGAGCATCCATGCTGTTGCAGAATGTGCCTCCTGCAATTCTACTGAGGTTCCTGCGGGAGCACAGATCAGAATGGGCAGATAACAACATTGATGCTTTTTCTGCTGCTGCTGTTAAAGTGGGCCCGTGGAGCTTACCAGGGTCCAGAGTTGGAAGTTTTGCGAATCAAGTAATACTTCCACTCGCTCACACGATTGAGCACGAAGAACTTCTAGAAGTGATTAAACTGGAAGGCGTTGGCCATACACCTGAAGATGCAATGATCCCTAGAGAAATGTTTCTTCTTCAACTCTGCAGTGGAATGGATGAAAACGCCATTGGCACATGTGCTGAGCTAATATTTGCTCCAATTGATGCTTCTTTTGCTGATGACGCACCGCTTTTACCCTCCGGGTTTCGGATCATACCACTTGATTCCGGAAAGGAAACATCCAGCCCAAATCGAACACTCGACCTTGCTTCTGCTCTTGAAATTGGGCCTACTGGAAATAGAGCACCAAACGACACTGTAAATTCTGGCTGTACGAGGTCTGTAATGACGATCGCCTTTGAATTTGCATTTGAAAGCCATATGCAAGAACATGTGGCATCAATGGCTCGACAATATGTCCGTAGTATTATATCGTCGGTCCAGAGGGTTGCATTAGCTCTCTCTCCTTCTCATTTAAGCTCTCATGGTGGACTAAGATCTCCCCTCGGTACTCCTGAAGCACAGACGCTTGCTCGTTGGATATGCAACAGTTACAGGTGCTACTTGGGGGTGGAGCTATTAAAATCTGGTAACGAAGGAGGAGGTGAGCTTGTCCTGAAAACATTGTGGCATCACTCGGATGCAATCATGTGCTGCTCTCTAAAGGCATTGCCAGTGTTCACTTTTGCAAATCAGGCAGGCCTCGACATGCTTGAGACAACCTTAGTTGCACTACAAGACATAACTTTGGAAAAGATATTCGACGACCATGGAAAAAAGACGCTCTGCTCCGAATTTCCACAGATAATGCAACAGGGATTTTCCTGTCTTCAAGGAGGCATATGCCTATCGAGCATGGGCCGACCTGTCTCATACGAAAGAGCTGTGGCTTGGAAGTGCCCCATTTGA 2466 46.84 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTLGAKDTNCEPVVTSGQHNLTSQHPPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNVTGWGRRPAALRALGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSSISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAFSAAAVKVGPWSLPGSRVGSFANQVILPLAHTIEHEELLEVIKLEGVGHTPEDAMIPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKETSSPNRTLDLASALEIGPTGNRAPNDTVNSGCTRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHGGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFSCLQGGICLSSMGRPVSYERAVAWKCPI 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4391594 4396575 + CmaCh08G007310.1 Cma08g00731 299426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00731 821 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Cma08g00731 821 ProSiteProfiles START domain profile. 152 380 IPR002913 GO:0008289
Cma08g00731 821 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Cma08g00731 821 Coils Coil 82 113 - -
Cma08g00731 821 Pfam START domain 162 370 IPR002913 GO:0008289
Cma08g00731 821 SMART START_1 161 371 IPR002913 GO:0008289
Cma08g00731 821 Gene3D - 196 380 IPR023393 -
Cma08g00731 821 SMART HOX_1 14 80 IPR001356 GO:0003677
Cma08g00731 821 Gene3D - 10 83 - -
Cma08g00731 821 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 818 - -
Cma08g00731 821 SUPERFAMILY Homeodomain-like 16 78 IPR009057 -
Cma08g00731 821 CDD bZIP 69 108 - -
Cma08g00731 821 CDD START_ArGLABRA2_like 156 372 - -
Cma08g00731 821 CDD homeodomain 17 77 IPR001356 GO:0003677
Cma08g00731 821 Pfam MEKHLA domain 695 818 IPR013978 -
Cma08g00731 821 MobiDBLite consensus disorder prediction 138 157 - -
Cma08g00731 821 SUPERFAMILY Bet v1-like 161 372 - -
Cma08g00731 821 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 818 IPR044830 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00731 Cma17g00776 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00731 Cma-Chr8:4391594 Cma09g00631 Cma-Chr9:2977089 0 dispersed
Cma17g00776 Cma-Chr17:6215474 Cma08g00731 Cma-Chr8:4391594 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35520 PF01852 START 2.70E-54 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00731 K09338 - csv:101213106 1607.04