Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00741 ATGGATAGATCACCCAGACTCACTTTCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTGGTCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGCTCTGCGAGCTCTCAAAGAGCTGAGCCCAAAAATTGTCAAAATCGACACCTATCAAACTCGATCAAAATCTCGTAGGTACATCTCTACATTAACCGATTACGGAGGAGACGAAGCAGCACCTCTCCAACCAATCTCTTCATTGTTGCCATATTTGAATCGATCTCGCACGTTTATGCTTGATTGTCACAATGTGCATCAAGACTTCGAATGGTGCTTGATGGACGAAGACTACAAGTTCCCTACCGCTCACGACATGCCCCAACTATCAAATTCATTCGCTCCCACCATACATGCCAGTGACCCGTCAAAGAGGGTCGCAACAACAACTTCTATAGGCCCTACATTACATTCTGGATTGCGATTTAATGCTACTTTTCAGACAGAGAAAAACAGAGTTCCCATTGGAGGATTTCGCCATTTTCTTGAATTCCAGAAGGTGGGGGATCGTCATTTTCTGTGGGTTTTCTTCTTTCTCTCTCTAAACATGGGGAAAGCTACCAGATGGTTGAAGGGTCTGTTGGGAATCAAGAAAGACAAAGACCCATCTGGGAATTCCGATTCAAAACCAACGCCGGTCGTCTCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAACGCCGCCGCCAACTGTGGCTGTAGAATCGGCTTGGTTCAGTTCCTACATTTCTGATTCGGAGAAAGAACAGAACAAGCACGCAATTGCAGTGGCGGCTGCTACTGCCGCTGCTGCTGATGCTGCCGTCGCCGCGGCTCAGGCGGCGGTCGCCGTTGTCCGGCTGACAAGCCAAAGAAGAGGTCCTCTGTATACTACTGGAAGAGATAGATGGGCTGCTGTCAAGATTCAAACAGTCTTTAAAGGCTACTTGGCTCGAAAAGCTCTACGAGCTCTCAAGGGACTGGTTAAGTTGCAGGCTGTCGTTAGAGGATTTCTCGTCCGAAAACGAGCTGCTGCAACTCTTCACAGTATGCAGGCACTTTTTAGAGCTCAAACTGCTCTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAAAATAGGTTTATTCCCGAGATTCGGCCTCGAAAATCTGCGGACCGTTTTGACGAAACAAGAAGTGAATTTCATAGTAAGAGATTGTCTATAGCATCATCTTACGAAACCTCCATCAACTCATTGGACGAAAGCCCAAAAATCGTCGAAATCGACACTTACCGAACCCGATCAAAGTCTCGTAGGTACATCTCTACATTGTCCGAATATGGAGGAGACGAAGCAGCACCACTCCAAGCAATCACTTCGCCATTGCCATATTCGAATCGACCTCGCACGTTTACGCTTGATTGTCACAATGTGCATCGAGACTTCGAATGGTGCTTGATGGGCGAAGACTGCAAGTTCCCTACAGCTCACAGCACGCCTCGGCTATCGAATTCATTCGCCTCCACGAACATGTCAGTCACCCCATCAAAGAGCGTCTGCGGCGACAGCTTCTTTAGGCCTTACATGAACTGCCCGAATTATATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAACAAAGGCCAGAGCCAGAATCCAAGAAGAAGCTGTCGTTGAATGAAATAATGGCAGCAAGAAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGCAACCAAACTCTGCAAGAACATGAAGAACATGAAGAACATGATGAAGATGAAGAAACATCATATGATTTTTGA 1923 47.48 MDRSPRLTFATAPVGSLNQATAYESPAHSSTGTRSESWSPPTAWKLTVSCSISLPDGALRALKELSPKIVKIDTYQTRSKSRRYISTLTDYGGDEAAPLQPISSLLPYLNRSRTFMLDCHNVHQDFEWCLMDEDYKFPTAHDMPQLSNSFAPTIHASDPSKRVATTTSIGPTLHSGLRFNATFQTEKNRVPIGGFRHFLEFQKVGDRHFLWVFFFLSLNMGKATRWLKGLLGIKKDKDPSGNSDSKPTPVVSDRKEKKRWSFAKSGRDSGQTPPPTVAVESAWFSSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQRRGPLYTTGRDRWAAVKIQTVFKGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSADRFDETRSEFHSKRLSIASSYETSINSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDCHNVHRDFEWCLMGEDCKFPTAHSTPRLSNSFASTNMSVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPESKKKLSLNEIMAARNSLSSVRMQRPSNQTLQEHEEHEEHDEDEETSYDF 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4454707 4459775 + CmaCh08G007410.1 Cma08g00741 299436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00741 640 MobiDBLite consensus disorder prediction 236 276 - -
Cma08g00741 640 Pfam IQ calmodulin-binding motif 341 361 IPR000048 GO:0005515
Cma08g00741 640 Pfam IQ calmodulin-binding motif 367 381 IPR000048 GO:0005515
Cma08g00741 640 SMART iq_5 339 361 IPR000048 GO:0005515
Cma08g00741 640 SMART iq_5 362 383 IPR000048 GO:0005515
Cma08g00741 640 ProSiteProfiles IQ motif profile. 340 368 IPR000048 GO:0005515
Cma08g00741 640 Pfam Protein of unknown function (DUF4005) 532 623 IPR025064 -
Cma08g00741 640 MobiDBLite consensus disorder prediction 249 264 - -
Cma08g00741 640 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 29 169 - -
Cma08g00741 640 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 220 617 - -
Cma08g00741 640 MobiDBLite consensus disorder prediction 602 618 - -
Cma08g00741 640 MobiDBLite consensus disorder prediction 576 640 - -
Cma08g00741 640 MobiDBLite consensus disorder prediction 582 598 - -
Cma08g00741 640 MobiDBLite consensus disorder prediction 20 40 - -
Cma08g00741 640 ProSiteProfiles IQ motif profile. 364 391 IPR000048 GO:0005515
Cma08g00741 640 PANTHER IQ-DOMAIN 5-RELATED 29 169 - -
Cma08g00741 640 PANTHER IQ-DOMAIN 5-RELATED 220 617 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00741 - - - csv:101204536 589.341
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g00741 Cma14g01288 CCT
Cma01g00093 Cma08g00741 CCT
Cma08g00741 Cma14g01288 ECH
Cma01g00093 Cma08g00741 ECH
Cma08g00741 Cma17g00759 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01376 Cma-Chr6:8970536 Cma08g00741 Cma-Chr8:4454707 2.78E-47 dispersed
Cma08g00741 Cma-Chr8:4454707 Cma14g01742 Cma-Chr14:12751382 3.52E-42 dispersed
Cma16g00142 Cma-Chr16:624748 Cma08g00741 Cma-Chr8:4454707 5.13E-26 dispersed
Cma01g00093 Cma-Chr1:425355 Cma08g00741 Cma-Chr8:4454707 6.43E-78 wgd
Cma10g00673 Cma-Chr10:3057232 Cma08g00741 Cma-Chr8:4454707 1.25E-06 wgd
Cma11g00652 Cma-Chr11:3171146 Cma08g00741 Cma-Chr8:4454707 6.34E-112 wgd
Cma14g01288 Cma-Chr14:10183858 Cma08g00741 Cma-Chr8:4454707 2.89E-100 wgd
Cma17g00759 Cma-Chr17:6124935 Cma08g00741 Cma-Chr8:4454707 1.95E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g268 Blo05g00074 Blo06g00714 . . Bpe06g00755 Bpe10g00674 . Bma13g01244 Cmo08g00706 Cmo17g00728 Cma01g00093 Cma14g01288 Car01g00077 Car14g01140 . Cpe12g00644 Cpe17g00525 . . . . . . . Cla07g01269 Cam07g1230 Cec07g1451 Cco07g1412 Clacu07g1334 Cmu07g1313 Cre07g1696 Cone20ag1278 Cone17ag0129 Cone16ag0724 Cone2ag0310 Lsi02g02822 Csa07g02270 Chy04g00953 Cme01g02724 . Blo10g00997 . . . Bpe09g00007 . Bma15g00349 . Cmo01g00094 Cmo14g01322 Cma08g00741 Cma17g00759 Car08g00629 Car17g00704 Cpe02g01697 Cpe03g01092 Bhi09g00470 . . . . . . Cla09g00021 Cam09g0023 Cec09g0022 Cco09g0024 Clacu09g0028 . Cre09g0022 Lsi07g00528 Csa03g02352 Chy01g02095 Cme04g01144
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01355 CCT,CST,ECH 99 267 IQD Protein Family AT3G09710 55.2 4.6e-47 186.4
Cma06g00359 CCT,ECH 1 266 IQD Protein Family AT5G03040 50.9 5.5e-61 232.6
Cma15g00434 CCT,CST,ECH 2 464 IQD Protein Family AT3G52290 54.5 6.7e-101 365.2
Cma04g02600 CCT,CST,ECH 1 473 IQD Protein Family AT3G52290 54.7 1.1e-100 364.4
Cma10g00857 CCT 1 394 IQD Protein Family AT3G22190 56.8 1.1e-92 337.8
Cma11g00912 CCT 43 448 IQD Protein Family AT3G22190 55.0 5.8e-89 325.5
Cma01g01729 . 1 434 IQD Protein Family AT2G26180 59.5 3.9e-114 409.1
Cma09g00343 . 1 438 IQD Protein Family AT2G26180 58.0 1.1e-111 401.0
Cma07g00203 . 1 279 IQD Protein Family AT2G33990 51.6 4.0e-64 242.3
Cma16g00415 . 40 223 IQD Protein Family AT2G33990 52.9 1.2e-47 187.6
Cma07g00203 . 1 253 IQD Protein Family AT3G15050 51.4 7.7e-60 228.0
Cma16g00415 . 43 216 IQD Protein Family AT3G15050 61.0 4.1e-53 205.7
Cma06g00946 . 1 500 IQD Protein Family AT4G00820 55.7 8.8e-127 451.4
Cma06g00946 . 1 500 IQD Protein Family AT1G01110 52.7 4.0e-124 442.6
Cma08g00741 CCT,CST,ECH 220 616 IQD Protein Family AT3G16490 51.6 5.9e-72 268.9
Cma17g00759 CCT,CST,ECH 1 389 IQD Protein Family AT3G16490 51.5 4.2e-70 262.7
Cma10g00673 CST 1 376 IQD Protein Family AT3G16490 53.1 5.2e-68 255.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00741 Cma_Chr08 FPKM 2.025928 2.169841 0.0 0.0 2.024509 2.068923 1.686773 0.0 0.0 0.0