Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00741 ATGGATAGATCACCCAGACTCACTTTCGCTACGGCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGTCCTGGTCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGCTCTGCGAGCTCTCAAAGAGCTGAGCCCAAAAATTGTCAAAATCGACACCTATCAAACTCGATCAAAATCTCGTAGGTACATCTCTACATTAACCGATTACGGAGGAGACGAAGCAGCACCTCTCCAACCAATCTCTTCATTGTTGCCATATTTGAATCGATCTCGCACGTTTATGCTTGATTGTCACAATGTGCATCAAGACTTCGAATGGTGCTTGATGGACGAAGACTACAAGTTCCCTACCGCTCACGACATGCCCCAACTATCAAATTCATTCGCTCCCACCATACATGCCAGTGACCCGTCAAAGAGGGTCGCAACAACAACTTCTATAGGCCCTACATTACATTCTGGATTGCGATTTAATGCTACTTTTCAGACAGAGAAAAACAGAGTTCCCATTGGAGGATTTCGCCATTTTCTTGAATTCCAGAAGGTGGGGGATCGTCATTTTCTGTGGGTTTTCTTCTTTCTCTCTCTAAACATGGGGAAAGCTACCAGATGGTTGAAGGGTCTGTTGGGAATCAAGAAAGACAAAGACCCATCTGGGAATTCCGATTCAAAACCAACGCCGGTCGTCTCCGACAGAAAGGAGAAGAAAAGATGGAGTTTTGCGAAGTCCGGTAGAGATTCCGGCCAAACGCCGCCGCCAACTGTGGCTGTAGAATCGGCTTGGTTCAGTTCCTACATTTCTGATTCGGAGAAAGAACAGAACAAGCACGCAATTGCAGTGGCGGCTGCTACTGCCGCTGCTGCTGATGCTGCCGTCGCCGCGGCTCAGGCGGCGGTCGCCGTTGTCCGGCTGACAAGCCAAAGAAGAGGTCCTCTGTATACTACTGGAAGAGATAGATGGGCTGCTGTCAAGATTCAAACAGTCTTTAAAGGCTACTTGGCTCGAAAAGCTCTACGAGCTCTCAAGGGACTGGTTAAGTTGCAGGCTGTCGTTAGAGGATTTCTCGTCCGAAAACGAGCTGCTGCAACTCTTCACAGTATGCAGGCACTTTTTAGAGCTCAAACTGCTCTTAGAACTCAAAGAGCTCGTCGATCTTTCAATAAAGAAAATAGGTTTATTCCCGAGATTCGGCCTCGAAAATCTGCGGACCGTTTTGACGAAACAAGAAGTGAATTTCATAGTAAGAGATTGTCTATAGCATCATCTTACGAAACCTCCATCAACTCATTGGACGAAAGCCCAAAAATCGTCGAAATCGACACTTACCGAACCCGATCAAAGTCTCGTAGGTACATCTCTACATTGTCCGAATATGGAGGAGACGAAGCAGCACCACTCCAAGCAATCACTTCGCCATTGCCATATTCGAATCGACCTCGCACGTTTACGCTTGATTGTCACAATGTGCATCGAGACTTCGAATGGTGCTTGATGGGCGAAGACTGCAAGTTCCCTACAGCTCACAGCACGCCTCGGCTATCGAATTCATTCGCCTCCACGAACATGTCAGTCACCCCATCAAAGAGCGTCTGCGGCGACAGCTTCTTTAGGCCTTACATGAACTGCCCGAATTATATGGCGAACACGCAATCGTTCAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAACAAAGGCCAGAGCCAGAATCCAAGAAGAAGCTGTCGTTGAATGAAATAATGGCAGCAAGAAACAGCTTAAGCAGTGTAAGAATGCAGAGACCAAGCAACCAAACTCTGCAAGAACATGAAGAACATGAAGAACATGATGAAGATGAAGAAACATCATATGATTTTTGA 1923 47.48 MDRSPRLTFATAPVGSLNQATAYESPAHSSTGTRSESWSPPTAWKLTVSCSISLPDGALRALKELSPKIVKIDTYQTRSKSRRYISTLTDYGGDEAAPLQPISSLLPYLNRSRTFMLDCHNVHQDFEWCLMDEDYKFPTAHDMPQLSNSFAPTIHASDPSKRVATTTSIGPTLHSGLRFNATFQTEKNRVPIGGFRHFLEFQKVGDRHFLWVFFFLSLNMGKATRWLKGLLGIKKDKDPSGNSDSKPTPVVSDRKEKKRWSFAKSGRDSGQTPPPTVAVESAWFSSYISDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQRRGPLYTTGRDRWAAVKIQTVFKGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTALRTQRARRSFNKENRFIPEIRPRKSADRFDETRSEFHSKRLSIASSYETSINSLDESPKIVEIDTYRTRSKSRRYISTLSEYGGDEAAPLQAITSPLPYSNRPRTFTLDCHNVHRDFEWCLMGEDCKFPTAHSTPRLSNSFASTNMSVTPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPESKKKLSLNEIMAARNSLSSVRMQRPSNQTLQEHEEHEEHDEDEETSYDF 640
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4454707 4459775 + CmaCh08G007410.1 Cma08g00741 299436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00741 640 MobiDBLite consensus disorder prediction 236 276 - -
Cma08g00741 640 Pfam IQ calmodulin-binding motif 341 361 IPR000048 GO:0005515
Cma08g00741 640 Pfam IQ calmodulin-binding motif 367 381 IPR000048 GO:0005515
Cma08g00741 640 SMART iq_5 339 361 IPR000048 GO:0005515
Cma08g00741 640 SMART iq_5 362 383 IPR000048 GO:0005515
Cma08g00741 640 ProSiteProfiles IQ motif profile. 340 368 IPR000048 GO:0005515
Cma08g00741 640 Pfam Protein of unknown function (DUF4005) 532 623 IPR025064 -
Cma08g00741 640 MobiDBLite consensus disorder prediction 249 264 - -
Cma08g00741 640 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 29 169 - -
Cma08g00741 640 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 220 617 - -
Cma08g00741 640 MobiDBLite consensus disorder prediction 602 618 - -
Cma08g00741 640 MobiDBLite consensus disorder prediction 576 640 - -
Cma08g00741 640 MobiDBLite consensus disorder prediction 582 598 - -
Cma08g00741 640 MobiDBLite consensus disorder prediction 20 40 - -
Cma08g00741 640 ProSiteProfiles IQ motif profile. 364 391 IPR000048 GO:0005515
Cma08g00741 640 PANTHER IQ-DOMAIN 5-RELATED 29 169 - -
Cma08g00741 640 PANTHER IQ-DOMAIN 5-RELATED 220 617 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00741 Cma14g01288 CCT
Cma01g00093 Cma08g00741 CCT
Cma08g00741 Cma14g01288 ECH
Cma01g00093 Cma08g00741 ECH
Cma08g00741 Cma17g00759 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01376 Cma-Chr6:8970536 Cma08g00741 Cma-Chr8:4454707 2.78E-47 dispersed
Cma08g00741 Cma-Chr8:4454707 Cma14g01742 Cma-Chr14:12751382 3.52E-42 dispersed
Cma16g00142 Cma-Chr16:624748 Cma08g00741 Cma-Chr8:4454707 5.13E-26 dispersed
Cma01g00093 Cma-Chr1:425355 Cma08g00741 Cma-Chr8:4454707 6.43E-78 wgd
Cma10g00673 Cma-Chr10:3057232 Cma08g00741 Cma-Chr8:4454707 1.25E-06 wgd
Cma11g00652 Cma-Chr11:3171146 Cma08g00741 Cma-Chr8:4454707 6.34E-112 wgd
Cma14g01288 Cma-Chr14:10183858 Cma08g00741 Cma-Chr8:4454707 2.89E-100 wgd
Cma17g00759 Cma-Chr17:6124935 Cma08g00741 Cma-Chr8:4454707 1.95E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00741 - - csv:101204536 589.341