Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00743 ATGGAGGCTACTCGATTGCAGAAGAGCGCTACGCTATTGGCATCCATGTTCAACAAATCTTCATCTTCATCGGAGCTTGCCATGTTCGGACTTCCAAACTACTCTGGCCACATGGGGAAGCGGCTGACTTTCGAAATAAATTTGGTCAAACTAACATCGACGGCGGCGGTGTCCGCGGCATTATTCCGGCGACCATCCTTGCTTTCCTGGAGTCGGAGCTTCAGAAACTGGACGGCGAGGAGGCCAGAATTGCAGACTATTTATTTCGACGTGATTGCCGGAACGAGCACCGGCGGATTGGTGACGGCAATGTTAACGGCACCAAATGAGAAGAACAGACCGTTGCTGTCGGCGAAGGACATTAAGGATTTTTACCTTAATCACTGTCCCAAGATTTTGAAAATGTCGTGGCAAACTTACGTCGACGATCACCTCATGTGTGACATTGAGGGCAACCATCTCTCCTCCGCCGCCATCATTGGACATGACGCCAGTGTTTGGGCGCAGAGTGCCTCTTTCCCTCAGTTCAAGCCGGAGGAGATTGCGGCGATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCAACTGGTTTACACCTTGCTGGTACCAAATACATGGTTATCCAGGGCGAGCCTGGAGCTGTTGTTCGTGGCAAAAAGGGCGCTGGTGGAATCACTGTGAAGAAAACAGAGAAAGCTGTGATTATTGGTATATACGATGAACCTGTGACTCCTGGACAATGCAATATGGTGGTCGAAAGGTTGGGAGATTACCTGATCGAACAGGACAAAAAAATCTTTTATACCCTTTTGATTCTGCAATTCTCAACTTTCTTCTGCTTAATTGAGGGCGTTTTTGATCGGAGATTTAAGATTTTCAACGAAAACGGAGAGAAAATAAAAAGTAAAAATGTGAAGTAG 924 47.19 MEATRLQKSATLLASMFNKSSSSSELAMFGLPNYSGHMGKRLTFEINLVKLTSTAAVSAALFRRPSLLSWSRSFRNWTARRPELQTIYFDVIAGTSTGGLVTAMLTAPNEKNRPLLSAKDIKDFYLNHCPKILKMSWQTYVDDHLMCDIEGNHLSSAAIIGHDASVWAQSASFPQFKPEEIAAIMKDFDEPGSLAPTGLHLAGTKYMVIQGEPGAVVRGKKGAGGITVKKTEKAVIIGIYDEPVTPGQCNMVVERLGDYLIEQDKKIFYTLLILQFSTFFCLIEGVFDRRFKIFNENGEKIKSKNVK 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4459692 4467173 - CmaCh08G007430.1 Cma08g00743 299438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00743 307 PRINTS Plant profilin signature 251 264 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Plant profilin signature 205 214 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Plant profilin signature 238 251 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Plant profilin signature 218 233 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Plant profilin signature 135 148 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Plant profilin signature 161 174 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Plant profilin signature 186 200 IPR005455 GO:0003779
Cma08g00743 307 PANTHER PROFILIN 135 263 - -
Cma08g00743 307 PRINTS Profilin signature 137 146 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Profilin signature 198 212 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Profilin signature 247 264 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Profilin signature 155 164 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Profilin signature 234 247 IPR005455 GO:0003779
Cma08g00743 307 PRINTS Profilin signature 174 194 IPR005455 GO:0003779
Cma08g00743 307 SUPERFAMILY FabD/lysophospholipase-like 88 136 IPR016035 -
Cma08g00743 307 SUPERFAMILY Profilin (actin-binding protein) 136 263 IPR036140 -
Cma08g00743 307 Gene3D Dynein light chain 2a, cytoplasmic 134 264 - -
Cma08g00743 307 CDD PROF 136 264 IPR005455 GO:0003779
Cma08g00743 307 SMART prof_2 135 265 IPR005455 GO:0003779
Cma08g00743 307 PANTHER PROFILIN 135 263 IPR005455 GO:0003779
Cma08g00743 307 Pfam Profilin 135 264 IPR005455 GO:0003779
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00091 Cma08g00743 CCT
Cma01g00091 Cma08g00743 ECH
Cma08g00743 Cma17g00758 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00743 Cma-Chr8:4459692 Cma12g01274 Cma-Chr12:9918513 2.15E-76 dispersed
Cma01g00091 Cma-Chr1:420491 Cma08g00743 Cma-Chr8:4459692 1.05E-63 wgd
Cma14g01287 Cma-Chr14:10164737 Cma08g00743 Cma-Chr8:4459692 5.78E-67 wgd
Cma17g00758 Cma-Chr17:6120509 Cma08g00743 Cma-Chr8:4459692 2.05E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00743 K05759 - pop:7475105 241.121