Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00745 ATGACCTTTTTGTCTCCACGACCATTGGAGGCAGCAAGTAGTCATTTACCTTCTTTCATTCCAACTGAGAATTCGACGCTTCCTCCTATCATCAATGCTTTTGAATTATATGGGATGAAAGAAATATCAGAGTTAGAAACAGAGCAAGGAGATGTGGATGCAATTACCAATATTAGGTCAAATTATGGAATAAAGAAGGATTGGCAAGGCGATCCATGTGTGCCAATGGAATACACTTGGAGTGGATTAAATTGTAGTAACAAAACTGCTCCAAGAATCATATCCTTGGACATATCTGGAAGTGGACTGATAGGTGACATATCTTCTTACATATCAAATATAACCATGGTGCAAATTCTGGATTTGTCCAATAATGGGTTGACTGGAGAGATACCGGAATTCTTAGTAAATTTGCCTAATCTAAGAATCCTTTCTTTAACCAGAAACAAGTTCACAGGCTTAATTCCCAAGGTTCTCTTGCAAAGAGCTGAAGCTGGATTGCTTACATTAAGTGTGGGTGAAAATCCAGATCTTTGTACATCACTTAAATGTGATAACAAGAAGAAAAAGAAGAAAAAGAGGAACAAGTACTTGGTTCCTGTAATTCTCGCCAGCATAATAGCTGTGTTCCTACCTATCCTTATAATTACTCTAGTAATCTACAAAAGGAGAAGACAAAGAGAGAATCTCAAAAGATCAATCCAAGAAAGGTTACTTAAGTCGAAGAACCAACAAGTTCATTACTCTGAGATATTGGTTATCACAGATAACTTTAAGACTACTCTTGGGGAAGGAGGGTTTGGAAAAGTATACTTGGGTGTACTGAGTGATAAAACCCAAGTTGCTGTCAAGTTGCTGTCTTCAATATCACAGCAAGGCTACAATGAATTCCGAGCTGAGGCTCAAATACTAACAGTTGTTCATCATAGAAATCTGGTTTCTCTTGTTGGTTACTGTGATGAAGCTGAGAATAAGGCACTCATTTATGAATTCATGTGTAACGGAAATTTAGGCAATCATCTATCTGATACAAGCGCAAAGGTGTTGAGTTGGATGGAAAGACTCCAAATTGCAGTTGATGCAGCACAAGGATTAGAATATTTACACAATGGTTGCGTGCCGCCCATCATTCACAGAGATATTAAGTCTTCTAATATCCTATTGAATGAAAAAATGCAAGCTAAAATATCTGATTTTGGACTGTCTAGAGTATTTGCAAATGAAAATGATACTCATTTCTCCACATGTCCTGCTGGCACCTTCGGTTACGTCGACCCTACGGTTCATTTATCCAGAAACTTCATCAAGAAAAGCGACGTTTACAGCTTTGGAATTATATTGCTTGAGCTGATCACTGGACATCCTGCCATAATCAAGAGCTCTGAAGTGAACACTCACATAGTTGATTGGGTTAAGCCTCTGATTTCCGAAGGGAACATCGAAAACATTGTCGATCCAAGGTTAGAAGGCTCTATTGAAAGTTGTTCTGCAAGGAAATTTGTGGAGCTTGCTCTATCATGCACATTGCCAACTTCAGCTGGAAGGCCGGACATGAGTGATGTGGTGTTGCAACTCATTGAGTGCTTGGAGATTGTTCAAGACAGAACTCCACCAATTCCACCTAACAATGCTGAGAACTTCTCACACAATTCAATTGGCTCTGTTTCATTTGTTGGTCCCAGATAG 1686 39.03 MTFLSPRPLEAASSHLPSFIPTENSTLPPIINAFELYGMKEISELETEQGDVDAITNIRSNYGIKKDWQGDPCVPMEYTWSGLNCSNKTAPRIISLDISGSGLIGDISSYISNITMVQILDLSNNGLTGEIPEFLVNLPNLRILSLTRNKFTGLIPKVLLQRAEAGLLTLSVGENPDLCTSLKCDNKKKKKKKRNKYLVPVILASIIAVFLPILIITLVIYKRRRQRENLKRSIQERLLKSKNQQVHYSEILVITDNFKTTLGEGGFGKVYLGVLSDKTQVAVKLLSSISQQGYNEFRAEAQILTVVHHRNLVSLVGYCDEAENKALIYEFMCNGNLGNHLSDTSAKVLSWMERLQIAVDAAQGLEYLHNGCVPPIIHRDIKSSNILLNEKMQAKISDFGLSRVFANENDTHFSTCPAGTFGYVDPTVHLSRNFIKKSDVYSFGIILLELITGHPAIIKSSEVNTHIVDWVKPLISEGNIENIVDPRLEGSIESCSARKFVELALSCTLPTSAGRPDMSDVVLQLIECLEIVQDRTPPIPPNNAENFSHNSIGSVSFVGPR 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4468880 4473130 + CmaCh08G007450.1 Cma08g00745 299440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00745 561 ProSitePatterns Protein kinases ATP-binding region signature. 262 284 IPR017441 GO:0005524
Cma08g00745 561 SUPERFAMILY Protein kinase-like (PK-like) 237 525 IPR011009 -
Cma08g00745 561 PANTHER LRR RECEPTOR-LIKE KINASE PLANT-LIKE PROTEIN 3 538 - -
Cma08g00745 561 PANTHER OS07G0107800 PROTEIN-RELATED 3 538 - -
Cma08g00745 561 ProSiteProfiles Protein kinase domain profile. 256 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00745 561 Gene3D Transferase(Phosphotransferase) domain 1 332 537 - -
Cma08g00745 561 SUPERFAMILY L domain-like 77 175 - -
Cma08g00745 561 Pfam Leucine Rich repeats (2 copies) 116 154 IPR025875 -
Cma08g00745 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Cma08g00745 561 CDD STKc_IRAK 262 522 - -
Cma08g00745 561 Gene3D Ribonuclease Inhibitor 53 166 IPR032675 -
Cma08g00745 561 Gene3D Phosphorylase Kinase; domain 1 238 331 - -
Cma08g00745 561 Pfam Protein tyrosine and serine/threonine kinase 258 471 IPR001245 GO:0004672|GO:0006468
Cma08g00745 561 SMART serkin_6 256 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00745 Cma-Chr8:4468880 Cma17g00757 Cma-Chr17:6108001 0 dispersed
Cma08g00745 Cma-Chr8:4468880 Cma08g00746 Cma-Chr8:4478596 0 tandem
Cma17g00755 Cma-Chr17:6099291 Cma08g00745 Cma-Chr8:4468880 1.65E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68756 PF07714 PK_Tyr_Ser-Thr 6.40E-47 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00745 - - cmax:111494885 1077.0