Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00773 ATGGCAGCTGTGGCTGCACCTATCTTTGCACCACCTGCAGCTTTCATCGCACCAGCAATTTTAGCAAACGCTGCAATTCCTCCAACAAGTACAGCTCGCAACGCAACAGTTGGTTTTACTGCCATCCCATCCCATCGCATCCCCGCCGCAGCCGCACCTGTTATCTCAATACCTTCCATCTTCAACTACAACAATCTCTTTAACCCTCAAATGACCTCCATCCACCACCACCACCACTCTCCTCCCCACCACCACCTCTCCAAATCCACCTCCACCGTCTCCTCCTCCTCCTCCTCCACCGCCACCACCCAAGCCTGCGCCGCCTGCAAGTACCAACGCCGCAAGTGCGTTCCCGACTGCATCCTAGCCCCCTACTTCCCTCACCATCGCCAACGCCAATTCCTAAACGCTCACAAACTCTTCGGCGTTAGCAACATCACCAAAATCATCAAAAACCTCGATCCCTTCCAAAAGGAAGAGGCAATGCGCACCATTATTTTCCAATCCGACGTCCGATCCCTCGATCCGGTCGGCGGATGTTACCGCATCATTCGTGACCTTCAGCGCCAGATCCAGTACAGCAAAGCCGAGCTTGAAATGGTGCTTCATCAATTGGCGATTTGTAAGCACCAGGCTGCTGCCTCTGTTTCTGCCGCTGCGATTCTGGACGCGGATCATCCTATGAGTGGAGGATTTTCCGGAATCGAGAACCAATTTGTGGAGGAAGGATTTGTAATTGGGGAAAATGAAAATGCGGAGAGTTTAGACGACGAAGCGGCGGAGGTTTGGGGAATTCAGGCTTCCGAAATCTCGCCCTGTTCTTCCTTGAAATCCTCTATTCATGATTTTGATCATATCAATATTCATTATCATCATCAACAATTCGTTAAGTTTCATCCGGATCATCATCAGTTTCTTCATAAGAGTGAGGAAGCAGGCATGGTGGAAATAGATAATGTGATATTGAAAGAAGACTCAGAGCCAATGCAAAATGATGGAGAGGTTGAAGTCCTAAAGTATATATTTGAGAAAAAGGTGAGTGATATAGTTAAAAAGAGAAGAGGTCGGTGGAGCGAATCGATAAGTGTCGTGGGGAAACGAGACAGCAGGTGGCAAATCAACTGCCAAATCTTTGAGGGCCGCCCTGCCCTAAGGTGGCGGTTGAGTGCGGTGAAAAAAGAAAGAGATCTGATGAAAACTGCTGAAATTTCCTCTGCGATTGCGACTCTGATGGGGTTTCGATCGCTGTTTCTGCTTTTTGGGATTTGTTTTGCTGTTCGTTCTTGCTCTGTCTGTGAATCTGCAGTTATCGTTCCGAACGGGCGAAGCGAAGCGCGTTCTTCTCTCACAGGTGAAACTTTGAAACTCAGTTTGAGAATTTCTGTAAAACTAGCAACATCTGATCTCTGTGTTCACTATGAACTATCAAATCTTGACAATGATCATATAAACAGTAACGTTTATTGTTCTTATGATGCAGCAACTCGATTAGACGATTCGAGTAGAGCTCCTAGCATTGCACTTCCACCTACCGTGCCTGCTAAGAAATGGGGGCATGGTCATGAATTTCGCCATTCAAGAAGGAAGTTCAGAAACAATGCTCCACGGCGTGGTTATCGTGCATCGACTCCGGAGAGTGGCCAGCAAGGTGGAGTCGAACGATATATTAATTTGTTTCTTGAATCTCATCCATTTAGATCTATGGAAGTATTCACTAGTGAAGTTTCAGGCCGTGCTGCTGTCTCTCCAATTCAATCACCATTACCATCTGCAACGAGAGGAAGGTCGCCAAGACCTGCGCCATCGCCAACGATTCCACCGAACCACTATTATATGACCATTCCTGCTCCTACAATTTCTCCTATGGGTTCTTATAAGAAGAGGAAGAAGAGCATGCCACCATCACAAGTTATGATGCTACCACCCCCACCTCCTAATGGGGATTGTGCGATATCATGTACCGAACCACTGACCTATACACCTCCCGGGACGTTGTGTGGGTGCGTGTGGCCAATTCAAGTCAAAATCAGTCTTGATGTTGCAATATATACGTTTTTCCCTCTGGTTTCGGAGCTGGCAGAGGAAATTGCAGACAGTATTGGTCTTCCGCCGTCTCCTCCGTTACCTCCTTCAGGTACTTCCTCCATTAACGATGGCTTGAACACGAGCAATACTAATATTGGAAATGCTATAAAACCTTTGGGAGTCGACGTGCCAAGAAGAAGGAAAGAAGGGCTTAGCGGAAACATGATCGCCGTGATTACTATATCGTCGTTCACTGCCTTTGTTATGTGTGTTGGACTTGCTTGGCTTTGCCTGTTGAGATGCAGAGTGTTTGCACATCAGGCAGCACAAGTTCCGCAAAACTTGATAGCCTCACCTACAAAACCATCAGGCACTGCTGGATTAATGATGGCTGGAAGTGAACCTGGTTCTTCATCCCTGCCTCTCGATGCCGATCCTATGACGTATATAGGAGCTGCAAAGAACTTCACCTTGAAAGATATGAAGAAAGCTACCTACAACTTCGATGTTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTTTACAGTGGCAGTTTGGATGATGGAAGGGAAGTGGCTGTGAAGGTTCTCAAACGACATAATCAACACGGTATTCGGGAATTCTTGGCCGAAGTCGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAATTGATTGGTATCTGTACAGAAGATCAGATTCGCTGCCTTGTTTATGAATTGGTTCCGAACGGAAGCGTCGAATCGCATTTACATGGCATTGACAAGTTAACTGGTCCTCTTGACTGGGATGCTCGGATGAAGATTGCCCTTGGTGCTGCTCGTGGCCTAGCCTATTTGCACGAAGACTCTAATCCTCGAGTTATTCATCGAGATTTCAAAGCTAGCAACATCCTGTTGGAATATGACTTCACACCGAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACCCATGTCATGGGAACTTTTGGTTATCTAGCTCCAGAGTATGCAATGACGGGGCACCTTCTTGTAAAGAGCGATGTCTACAGCTATGGTGTTGTCCTTCTCGAGCTACTTACGGGAAGAAAACCAGTTGACTTGTTGCTTCCACCGGGGCAAGAAAATCTTGTTGCTTGGGCTCGACCGCTTCTCACGAGCAAGGAGGGGTTAGATGTAATTACAGACCCAGCTATTAAGTCTGATATCTCTATTGATAGCTTGGCCAGAGTAGCTGCAATTGCTTCTATGTGTGTGCAACCCGAAGTGTCTCACAGACCATTTATGGGCGAGGTTGTTCAAGCTCTAAAGCTTGTTTGCAATGAGTTCGAAGAGACAAATGAGGCAGGTTCACAAAGTTACAGCCGAGACGAACTTCTAAGTTACATGGATAGTAAATTTGGAGGAATTTCAGGGGAAATACTAAACGCTACCGACACCTTGCACCCGTTTCCTTCAAAAAAAGAGACAAATGTAGGACTATCGGCATCGGATTTGATCAGCGCATCTGCAAGATTTGAAGGACAGGAATTAGTTTCCTTGAGATGGCATACATCAAACTCAGAACCCTTGAAAATGGGAAGGAAAGGGCAGTTCTGGCAGAAACTAAGAAGTTTATCACGAGGCAGCATCAGTGAACATGGCTTTTCTTCTAAATTTTGGCCTGGATTTCGTTAG 3717 46.27 MAAVAAPIFAPPAAFIAPAILANAAIPPTSTARNATVGFTAIPSHRIPAAAAPVISIPSIFNYNNLFNPQMTSIHHHHHSPPHHHLSKSTSTVSSSSSSTATTQACAACKYQRRKCVPDCILAPYFPHHRQRQFLNAHKLFGVSNITKIIKNLDPFQKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIQYSKAELEMVLHQLAICKHQAAASVSAAAILDADHPMSGGFSGIENQFVEEGFVIGENENAESLDDEAAEVWGIQASEISPCSSLKSSIHDFDHINIHYHHQQFVKFHPDHHQFLHKSEEAGMVEIDNVILKEDSEPMQNDGEVEVLKYIFEKKVSDIVKKRRGRWSESISVVGKRDSRWQINCQIFEGRPALRWRLSAVKKERDLMKTAEISSAIATLMGFRSLFLLFGICFAVRSCSVCESAVIVPNGRSEARSSLTGETLKLSLRISVKLATSDLCVHYELSNLDNDHINSNVYCSYDAATRLDDSSRAPSIALPPTVPAKKWGHGHEFRHSRRKFRNNAPRRGYRASTPESGQQGGVERYINLFLESHPFRSMEVFTSEVSGRAAVSPIQSPLPSATRGRSPRPAPSPTIPPNHYYMTIPAPTISPMGSYKKRKKSMPPSQVMMLPPPPPNGDCAISCTEPLTYTPPGTLCGCVWPIQVKISLDVAIYTFFPLVSELAEEIADSIGLPPSPPLPPSGTSSINDGLNTSNTNIGNAIKPLGVDVPRRRKEGLSGNMIAVITISSFTAFVMCVGLAWLCLLRCRVFAHQAAQVPQNLIASPTKPSGTAGLMMAGSEPGSSSLPLDADPMTYIGAAKNFTLKDMKKATYNFDVARILGEGGFGIVYSGSLDDGREVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKLTGPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLLLPPGQENLVAWARPLLTSKEGLDVITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNEAGSQSYSRDELLSYMDSKFGGISGEILNATDTLHPFPSKKETNVGLSASDLISASARFEGQELVSLRWHTSNSEPLKMGRKGQFWQKLRSLSRGSISEHGFSSKFWPGFR 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4659704 4674286 - CmaCh08G007730.1 Cma08g00773 299468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00773 1238 ProSitePatterns Protein kinases ATP-binding region signature. 849 871 IPR017441 GO:0005524
Cma08g00773 1238 Pfam Lateral organ boundaries (LOB) domain 105 201 IPR004883 -
Cma08g00773 1238 SUPERFAMILY Protein kinase-like (PK-like) 823 1116 IPR011009 -
Cma08g00773 1238 PANTHER OS01G0750732 PROTEIN 563 702 - -
Cma08g00773 1238 MobiDBLite consensus disorder prediction 581 612 - -
Cma08g00773 1238 PANTHER OS01G0750732 PROTEIN 701 1237 - -
Cma08g00773 1238 MobiDBLite consensus disorder prediction 594 610 - -
Cma08g00773 1238 ProSitePatterns Serine/Threonine protein kinases active-site signature. 965 977 IPR008271 GO:0004672|GO:0006468
Cma08g00773 1238 Gene3D Transferase(Phosphotransferase) domain 1 919 1140 - -
Cma08g00773 1238 MobiDBLite consensus disorder prediction 516 548 - -
Cma08g00773 1238 Gene3D Phosphorylase Kinase; domain 1 814 918 - -
Cma08g00773 1238 CDD STKc_IRAK 849 1117 - -
Cma08g00773 1238 MobiDBLite consensus disorder prediction 702 722 - -
Cma08g00773 1238 ProSiteProfiles LOB domain profile. 104 205 IPR004883 -
Cma08g00773 1238 PANTHER OS01G0750732 PROTEIN 701 1237 - -
Cma08g00773 1238 Pfam Protein tyrosine and serine/threonine kinase 846 1116 IPR001245 GO:0004672|GO:0006468
Cma08g00773 1238 PANTHER OS01G0750732 PROTEIN 563 702 - -
Cma08g00773 1238 MobiDBLite consensus disorder prediction 73 97 - -
Cma08g00773 1238 MobiDBLite consensus disorder prediction 520 535 - -
Cma08g00773 1238 ProSiteProfiles Protein kinase domain profile. 843 1124 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00773 Cma-Chr8:4659704 Cma17g00725 Cma-Chr17:5938256 8.51E-85 dispersed
Cma10g00720 Cma-Chr10:3251540 Cma08g00773 Cma-Chr8:4659704 2.86E-22 wgd
Cma11g00695 Cma-Chr11:3381612 Cma08g00773 Cma-Chr8:4659704 2.22E-17 wgd
Cma17g00721 Cma-Chr17:5922371 Cma08g00773 Cma-Chr8:4659704 3.10E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35523 PF07714 PK_Tyr_Ser-Thr 2.00E-46 CL0016 Cma TF
68759 PF07714 PK_Tyr_Ser-Thr 2.00E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00773 - - cpep:111778754 1050.04