Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00775 ATGATGAAAGGTAGTTTTTTGTCTCAACAACAACAACAACTACTCATGGATCAAACTTTGTCCAATTTGACTTCTCCTTCTTCTCCCAATAACCAGACCCAATTTTTCTCTCCTCCTCCCCCGAAGCGGAAGCGGAATCTTGCAGGAAATCCCGACCCAGATGCTGAAGTGATAGCGTTATCGCCGAAAACGCTCATGGCGACAAATCGATTCGTGTGCGAGATTTGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAGCTACATAGAAGAGGGCATAATCTTCCATGGAAGCTGAAGCAAAGATCAAACAAGGAGGTGATAAAGAAGAAGGTGTATGTTTGTCCTGAGCCAAGCTGTGTCCACCATGATCCATTAAGAGCTCTTGGAGACCTCACAGGAATAAAGAAGCATTTTTGCAGAAAACATGGTGAAAAGAAGTGGAAATGTGATAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAATTTGTGGCACTAAGGAATATAAATGTGATTGTGGAACACTTTTCTCGAGGAGAGATAGTTTTATTACACATAGAGCTTTCTGTGATGCATTAGCGGATGAAAGTGCAAGATCAGCCATGGAATTAAGCCCTCTAATCTCAAATTACAATAATTTACAAGAATTATTATTTAAACGAGGCTTTGGCGGCGGTGATAGTAGCAACAACGACGACAACAATCTGAAAACGGAAATCCCGTCGTGGTTGCAGCCAGACGAAATCTTCGTCGGGAGTACCCACCAAACCCTAAACCCTAACCCTAGTGGTTTAGTTCCTCCTTGTGTTTCGTCTCCTCATATATCAGCGACTGCGCTGCTTCAGAAGGCAGCTCAAATGGGTGCGACCATGAGTAGTCCCTTGATGGGAAGGACCCACGAGGTGGTTCACGTGTCTACAGGTAATTATGGGGAGATGGGTATAAGGTCACGTGAAGGAGGAATGGGCGTCAGTTGTAGTAGTATTAGTTGTTGTACTGATTATGGGAATAAAGCTGCGGCGGTTTCTGCGGCGGTTACTGCCACTGCTACGCCTTCTGGGCCGACCACTTTTCTTCATGACATGATAAATTCCCTCGCTTCTGCTTCTCATCCTTTCCATCAAGATTCCTCCGCCTTTAACGCCGCCGCAATCGCCGCCATGCACCACCACACCGCCGCCGGAAGAAGCGACGGTTTAACCAGAGATTTCTTGGGGCTCCGTTCACTTTCCCACGGAGATATTCTAAGCATTACCGGTTTTGGAAACTGTATTGTTCCCAATTCTGCCACTCTTCAGAGCCAAACCCAGAAGCCTTGGCAGGGTTAG 1347 45.51 MMKGSFLSQQQQQLLMDQTLSNLTSPSSPNNQTQFFSPPPPKRKRNLAGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEPSCVHHDPLRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDALADESARSAMELSPLISNYNNLQELLFKRGFGGGDSSNNDDNNLKTEIPSWLQPDEIFVGSTHQTLNPNPSGLVPPCVSSPHISATALLQKAAQMGATMSSPLMGRTHEVVHVSTGNYGEMGIRSREGGMGVSCSSISCCTDYGNKAAAVSAAVTATATPSGPTTFLHDMINSLASASHPFHQDSSAFNAAAIAAMHHHTAAGRSDGLTRDFLGLRSLSHGDILSITGFGNCIVPNSATLQSQTQKPWQG 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4677786 4680048 - CmaCh08G007750.1 Cma08g00775 299470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00775 448 Gene3D Classic Zinc Finger 50 118 - -
Cma08g00775 448 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Cma08g00775 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Cma08g00775 448 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Cma08g00775 448 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 429 - -
Cma08g00775 448 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 24 429 - -
Cma08g00775 448 Gene3D Classic Zinc Finger 128 205 - -
Cma08g00775 448 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Cma08g00775 448 SMART c2h2final6 113 143 IPR013087 -
Cma08g00775 448 SMART c2h2final6 148 168 IPR013087 -
Cma08g00775 448 SMART c2h2final6 71 93 IPR013087 -
Cma08g00775 448 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00775 Cma-Chr8:4677786 Cma03g00762 Cma-Chr3:5974951 3.11E-111 dispersed
Cma11g01133 Cma-Chr11:6455312 Cma08g00775 Cma-Chr8:4677786 3.23E-104 transposed
Cma01g00059 Cma-Chr1:264054 Cma08g00775 Cma-Chr8:4677786 1.47E-130 wgd
Cma14g01261 Cma-Chr14:9995680 Cma08g00775 Cma-Chr8:4677786 5.78E-132 wgd
Cma17g00719 Cma-Chr17:5913485 Cma08g00775 Cma-Chr8:4677786 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35524 PF00096 zf-C2H2 0.0044 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00775 K25870 - csv:101220200 585.104