Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00781 ATGAAAATCGAGTCGATGAGACGGGGAAGGATAAGGGAGAGGATCCGGCGGAGTCATCTCTATACATTCGGTTGCCTCCAGTCACAGAGTGCACATGAGGCCGATGATTCGAATCCATTGACAGGACCTGGTTTTTCACGAATTGTCTGTTGTAACCAACCTCATCTCCATGAGAAACAGCCATTGAAATACTGCTTCAATTACATATCCACAACCAAGTATAATGTTCTTACTTTCTTGCCTAAGGCTCTCTTTGAGCAATTCAGGAGAGTTGCCAATTTGTACTTTCTTTTGGCTGCATTGTTGTCCCTCACACCAGTTGCCCCATTTTCTGCCATGAGCATGATTGCTCCTCTGGTATTTGTTGTTGGTCTCAGTATGGCTAAAGAAGCTCTCGAGGACTGGAGTCGATTTGTGCAGGATATGAAGGTTAATCTCAGGAAAGTGATTGTTCATAAAGGGGACGGTGTTTTTGGTCATAGACCTTGGCACAAGATTCGTGTAGGAGACATAGTGAAAGTAGAGAAGGATCAGTTCTTTCCCGCTGATCTACTTCTTTTATCGTCGTGCTATGAGGACGGAATATGTTACGTGGAAACGATGAATTTGGATGGCGAGACTAATCTCAAAGTAAAGAGATCTTTGGAAGTAACCTTAGCATTGGATGATAATGCTACCTTCAAAGACTTTACTGGAAAGATTTACTGTGAAGATCCAAACCCAAATCTTTACACATTTGTTGGTAACTTGGAGTATGATCGGCAGATTTATCCTCTTGATCCTAGCCAGATTCTCCTCAGAGATTCTAAATTGAGGAACACAGCTTATGCCTACGGGGTAGTGATATTTACTGGACATGATAGTAAAGTCATGCAGAATGCTACAAAATCTCCTTCCAAAAGAAGTAGAATAGAGAGAAAAATGGACAAGATTATTTACATCCTTTTTACCTTACTTATACTGATATCATCAATGAGCTCAATAGGTTTTGCTGTGAAGACAAAGTACCAAATGACTGACTGGTGGTATTTACAAACTACTGGTGATGATCCACTGTATAACCCTCGTCAGCCAACCTTATCAGGGCTCATACATTTGATCACTGCTCTTATACTCTATGGATATTTGATACCGATCTCGCTCTATGTTTCCATTGAGGTTGTTAAGGTTCTACAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGAAGAGACTAGTAATCCCGCTCGAGCTCGGACTTCAAATTTGAACGAGGAGTTGGGTCAGGTAGACACAATCCTATCCGACAAAACTGGCACTTTGACTTGTAATCAGATGGACTTTCTGAAATGTTCCATTGCTGGGACTGCATATGGTGTTAAATCTAGTGAGGTTGAACTTGCAGCTGTAAGGCAGATGGCATATGACCTTGACGAGCAGGATGCAGATTATTCTGATGTTGTTGTGCAAAAAAATAGCCGACAGTCTTCCATGGCATGGGACCGAAAAGAATCGGAGATTGAATTGGAGACTGTTCTTACTTCAAGTGTTGTCAAAGAGCAGAAGTCTGCCATAAAGTATTTTGGTTTTGAGGACAGCCGTTTAACAAATGGAAACTGGTTGAATGAGCCTAATCATGATGTTCTTCTATTGTTCTTCAGAATTTTAGCAATTTGTCACACTGCAATTCCTGAGCTGAATGAGGAAACTGGTGCTTTTACTTATGAAGCAGAGTCCCCTGATGAAGGTGCTTTTCTTGTTGCAGCTAGAGAATTTGGTTTTGAGTTTTGTAAGAGAACACAATCAACCTTGGTTGTGCGTGAAAGATATCCTTCTCCTAACCAAGTAGTTGAAAGGGAATACAAAGTTTTAAATCTTTTGGATTTCACTAGCAAGAGAAAGAGAATGTCTGTAATTGTTAGGGATGAGTGTGGCCATATTATTCTTCTCTGTAAAGGTGCTGATAGCATCATCTTCGATCTACTATCGAAGAACGGAAGAACGTATGAGGAAGCAACCACAAGGCATTTGAATGAATATGGAGAAGCTGGGTTGCGAACTCTGGCACTTGCTTATAGGAAGCTTGAGGAGTCCGAGTATACTGCTTGGAACAATGAGTTTCAGAAGGCTAAAACGTCCATTGGAGGAGATAGAGATGCAATGCTCGAGCGAGTGTCCGACCTCATGGAACGAGAATTAACCCTTGTTGGTGCTACCGCTGTGGAGGATAAGTTACAGAATGGGGTGCCCCAATGCATTGATAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTTTGACTGGAGATAAAATGGAAACTGCCATCAACATAGGATATGCATGCAGTTTACTTCGACAGGGAATGAAGCGGATTTGCATATCAACAAGCTCAGATTCTTTAGCTCAGGAAGGAAAAGAGGCCATGAAAGAATATATTTTGAATCAAATCACCAACGCCTCGCAAATGATCAATCTGGAGAAGGATCCACATGCTGCATTCGCTTTAATCATTGATGGGAAGACTCTAACGTATGCTCTCGAAGATGATATGAAGTTTCAATTCCTTGGACTCGCTGTTGATTGTGCATCGGTCATTTGCTGTCGTGTCTCCCCCAAGCAAAAAGCCCTGGTAACAAGGTTAGTGAAAGAAGGTACTGGGAAAACCACTTTGGCAATTGGTGATGGCGCAAACGATGTGGGAATGATTCAAGAGGCCGATATTGGTGTCGGTATCAGCGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGACTTCTCTATTGCCCAATTTCGGTTTCTTGAAAGGCTTCTGGTAGTCCATGGTCATTGGTGCTACAAGAGGATAGCGCAAATGATATGCTATTTCTTCTACAAGAATATCGCATTTGGATTAACGCTGTTCTACTTCGAAGCATACGCGGGATTTTCTGGGCAATCAATATATGACGATTTCTACATGCTATCATTTAATGTCATTCTCACATCATTGCCTGTAATTTCCCTGGGAGTTTTTGAACAAGATGTCTCTTCTGAGGTGTGCCTACAGTTCCCTGCACTCTATCAGCAAGGCCCCCAAAACTTGTTCTTCGACTGGCCTCGGATTTTCGGATGGATGGGGAATGCTGTCTACTCCTCTATAGTTACTTTCTTCCTCAATCTCATCATCTTCTACGACCAGGCATTCCGCTCAGGTGGCCAAACTGCCGATATGACTGCTGTCGGAACCACCATGTTCACTTGCATTATATGGGCAGTAAATTGCCAGATTGCTCTCACAATGAGCCACTTCACCTGGATCCAACACCTTCTCGTCTGGGGTAGTATCGCCATGTGGTATTTGTTCATCTTACTCTATGGAATGGTAATATCCTCTGGAAATGCCTATAAAATATTTGTTGAAGCATTAGGACCTGCCCCTGTTTACTGGGTAGCCACCATTTTAGTAACAATTACCTGCAATCTCCCATATCTTGCCCATATATCCTTCCAGAGAAGCTTCCATCCAATGGATCATCACATAATCCAAGAAATCAAATACTACCGAAAGGATGTGGAAGACACACACATGTGGACTAGGGAAAGATCAAAAGCAAGGCAAAAAACCAAGATAGGATTCACAGCCAGAGTAGAAGCTAAGATCAGGCAGCTAAAAGGAAAGCTCCAAAAGAAGCACTCTTCCCTTGGAGCTCCTCCAACTGGTACTATTTCATGA 3696 42.29 MKIESMRRGRIRERIRRSHLYTFGCLQSQSAHEADDSNPLTGPGFSRIVCCNQPHLHEKQPLKYCFNYISTTKYNVLTFLPKALFEQFRRVANLYFLLAALLSLTPVAPFSAMSMIAPLVFVVGLSMAKEALEDWSRFVQDMKVNLRKVIVHKGDGVFGHRPWHKIRVGDIVKVEKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRSLEVTLALDDNATFKDFTGKIYCEDPNPNLYTFVGNLEYDRQIYPLDPSQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSRIERKMDKIIYILFTLLILISSMSSIGFAVKTKYQMTDWWYLQTTGDDPLYNPRQPTLSGLIHLITALILYGYLIPISLYVSIEVVKVLQASFINQDINMYCEETSNPARARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVKSSEVELAAVRQMAYDLDEQDADYSDVVVQKNSRQSSMAWDRKESEIELETVLTSSVVKEQKSAIKYFGFEDSRLTNGNWLNEPNHDVLLLFFRILAICHTAIPELNEETGAFTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVRERYPSPNQVVEREYKVLNLLDFTSKRKRMSVIVRDECGHIILLCKGADSIIFDLLSKNGRTYEEATTRHLNEYGEAGLRTLALAYRKLEESEYTAWNNEFQKAKTSIGGDRDAMLERVSDLMERELTLVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISTSSDSLAQEGKEAMKEYILNQITNASQMINLEKDPHAAFALIIDGKTLTYALEDDMKFQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVSSEVCLQFPALYQQGPQNLFFDWPRIFGWMGNAVYSSIVTFFLNLIIFYDQAFRSGGQTADMTAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLLVWGSIAMWYLFILLYGMVISSGNAYKIFVEALGPAPVYWVATILVTITCNLPYLAHISFQRSFHPMDHHIIQEIKYYRKDVEDTHMWTRERSKARQKTKIGFTARVEAKIRQLKGKLQKKHSSLGAPPTGTIS 1231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4707590 4712555 + CmaCh08G007810.1 Cma08g00781 299476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00781 1231 Gene3D - 596 731 IPR023299 GO:0000166
Cma08g00781 1231 ProSitePatterns E1-E2 ATPases phosphorylation site. 431 437 IPR018303 -
Cma08g00781 1231 PRINTS P-type cation-transporting ATPase superfamily signature 429 443 - -
Cma08g00781 1231 PRINTS P-type cation-transporting ATPase superfamily signature 887 906 - -
Cma08g00781 1231 SFLD C1.7: P-type atpase like 413 938 - -
Cma08g00781 1231 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 64 1171 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma08g00781 1231 Pfam Cation transport ATPase (P-type) 554 655 - -
Cma08g00781 1231 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 363 479 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma08g00781 1231 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 859 968 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma08g00781 1231 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 1223 - -
Cma08g00781 1231 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 530 693 IPR023299 GO:0000166
Cma08g00781 1231 Pfam Phospholipid-translocating P-type ATPase C-terminal 915 1163 IPR032630 -
Cma08g00781 1231 SUPERFAMILY Calcium ATPase, transmembrane domain M 62 1159 IPR023298 -
Cma08g00781 1231 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 6 1223 - -
Cma08g00781 1231 MobiDBLite consensus disorder prediction 1212 1231 - -
Cma08g00781 1231 Pfam Phospholipid-translocating ATPase N-terminal 50 116 IPR032631 -
Cma08g00781 1231 Gene3D - 123 296 - -
Cma08g00781 1231 Gene3D - 732 927 IPR023214 -
Cma08g00781 1231 CDD P-type_ATPase_APLT_Dnf-like 67 1046 - -
Cma08g00781 1231 SUPERFAMILY Calcium ATPase, transduction domain A 152 294 IPR008250 -
Cma08g00781 1231 SUPERFAMILY HAD-like 417 931 IPR036412 -
Cma08g00781 1231 SFLD p-type atpase 413 938 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00781 Cma-Chr8:4707590 Cma18g00030 Cma-Chr18:123057 0 dispersed
Cma17g00714 Cma-Chr17:5883351 Cma08g00781 Cma-Chr8:4707590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00781 K01530 - csv:101221220 2259.57