Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00783 ATGCTGGGGTTGAAATTAACCAATTCACTTGATAAGTTCTATACGAGGTTTACTCGTGCTTCTTTATTTGCTTCATTGAGTGATGCAATTCGAAGTGTTATTACTTGGGGCAATGGAACTGATATCACATTGGTTGGGAAGGAGAACAAAAATACCCTTTATAAGGGCGTGGAAACCTTCTCCTCGCAGAAGCGTTTTAAAGCCTTGAGGGAAAGCTCAAAGAGGACAATATCGACTGGCGGTGGATCTAGATTGAAGGTACAGGCATTAAAAGAACTGGCAGGTCCTCCCATATTGAGGCATTCTTTGGCTTTTGCAGTCAGGTGCTTCACCAGATTTTCTGTAAAATATCTCTTTTTTGTTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCCACGGATCAGATCCGAGGAGTTTGGCAAACCCTAGCGCCCTTTCTTCAATCTCCTCATTTTCCTCTATCAATCTGCAGGGGACGAACATGGTTGTATGTGTAGCCATGGCAGGTTTGGCTCCAGAAGGATCCCAATTTGATTCTCGCCAATATGATTCTAAAATGAATGAGATTCTTTCAGCAGAAGGCCAGGAATTTTTTACATCTTATGATGAAGTTTATGAAAGTTTTGATTCAATGGGGCTGCAAGAAAACCTCCTCAGAGGCATTTATGCTTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGTATTGTTCCATTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGTACTGGGAAGACTGCTACCTTCTGCTCTGGGATACTGCAGCAACTTGATTATGATCTAGTCCAGTGCCAGGCTTTAGTTTTGGCACCAACTAGGGAGCTCGCTCAACAAATAGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCTTGTGTGGGAGGGACAAGTGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCACGTTGTAGTTGGAACACCTGGTCGTGTGTTTGATATGTTAAGGAGGCAGTCTCTTCGCCCGGATTCTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGATTTATGACATTTTCCAGCTTTTGCCATCAAAAATTCAAGTTGGGGTCTTCTCCGCCACAATGCCACCTGAAGCATTGGAGATCACTAGGAAGTTCATGAATAAGCCAGTCCGAATCTTAGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTTGAAACTCTTTGTGATCTCTACGAGACTCTGGCCATCACTCAAAGTGTTATCTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACTGTATCTGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGCGAATTCCGGTCTGGCTCTTCTCGAGTTCTTATTACAACTGATTTGTTGGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAATTATGATTTGCCAACCCAACCCGAAAATTATCTTCATCGTATTGGGCGAAGCGGTCGATTTGGAAGAAAAGGTGTCGCCATCAATTTTGTTACAAACGACGATGAGAGAATGCTTTTTGATATTCAGAATTTTGTTTGTTTGGTTTATTGTTATTATTATTTTCTTTTTTGTTTGTTTTGTTTCGTTGTTTATAGGGATGGGATTTCTCTTATCTCTGAAGTGAACTATTTAGCCTCCCACCAGAACTCTTCCCCCCCCCCCCATTAG 1827 42.64 MLGLKLTNSLDKFYTRFTRASLFASLSDAIRSVITWGNGTDITLVGKENKNTLYKGVETFSSQKRFKALRESSKRTISTGGGSRLKVQALKELAGPPILRHSLAFAVRCFTRFSVKYLFFVRCALPNTRLQLHGSDPRSLANPSALSSISSFSSINLQGTNMVVCVAMAGLAPEGSQFDSRQYDSKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYDLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDERMLFDIQNFVCLVYCYYYFLFCLFCFVVYRDGISLISEVNYLASHQNSSPPPH 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4715727 4723219 - CmaCh08G007830.1 Cma08g00783 299478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00783 608 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 408 IPR014001 -
Cma08g00783 608 Pfam DEAD/DEAH box helicase 232 393 IPR011545 GO:0003676|GO:0005524
Cma08g00783 608 CDD SF2_C_DEAD 420 550 - -
Cma08g00783 608 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 207 235 IPR014014 GO:0003724
Cma08g00783 608 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 354 362 IPR000629 -
Cma08g00783 608 PANTHER BNAA02G16100D PROTEIN 173 570 - -
Cma08g00783 608 CDD DEADc_EIF4A 212 409 - -
Cma08g00783 608 Pfam Helicase conserved C-terminal domain 433 541 IPR001650 -
Cma08g00783 608 Gene3D - 197 415 IPR027417 -
Cma08g00783 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 561 IPR027417 -
Cma08g00783 608 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 173 570 - -
Cma08g00783 608 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 419 579 IPR001650 -
Cma08g00783 608 SMART ultradead3 226 423 IPR014001 -
Cma08g00783 608 Gene3D - 416 566 IPR027417 -
Cma08g00783 608 SMART helicmild6 460 541 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00783 Cma-Chr8:4715727 Cma14g00966 Cma-Chr14:5054263 5.30E-168 dispersed
Cma01g00052 Cma-Chr1:206398 Cma08g00783 Cma-Chr8:4715727 0 wgd
Cma14g01252 Cma-Chr14:9927541 Cma08g00783 Cma-Chr8:4715727 0 wgd
Cma17g00712 Cma-Chr17:5877920 Cma08g00783 Cma-Chr8:4715727 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00783 K03257 - csv:101221456 775.778