Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00787 ATGAATTTGGGAGCGGCGGAGGAAGAATCACCGCAGGAGATTCATATCCCTGCCGAAATCGATTGGCAAATGCTTGATAAATCTAAATTCTTCTTTCTCGGTGCAGCGCTGTTTTCAGGCGTTTCGGCGTCTCTTTACCCTATGGTGGTGTTGAAAACTCGTCAACAGGTTGCTTATTCGGAGCTTCCCTGCATCAGAACTGCATTTTCTCTCGTCCGCCATGAGGGTTTTCGTGCTCTGTACAGAGGATTTGGAACTTCTCTGATGGGGACTATCCCTGCTAGGGCTCTGTACATGGGAGCCCTAGAGTGTACAAAGAGCTATGTCGGAACCGCCACTGTTAGAATGGGATTTCCAGAGGCTACTGCCGCTACAATTGCTAATGCAGCCGCTGGATTGAGTGCTGCAATGGCCGCTCAACTCGTATGGACTCCCGTTGATGTAGTGAGTCAAAGACTGATGGTTCAAAGTAGCTCCTCCATTCATTACATCAATGGAATCGATGCGTTTCGAAAGATCCTTGACGCCGATGGTCTCCGAGGCCTCTACCGAGGCTTTGGGATATCGATTATGACATACGCGCCATCGAATGCGATGTGGTGGGCTTCTTATTATGTAGCACAGCGGCTGATTTGGGGAGGAATTGGATGCTATCAAGCTAAGAAGGTTGTTGGTGAAGGCAATGACAATGGGGCTAATGTTTACAGGCCAGATTCCAAGACTGTGATGGCAGTACAGGGTGGGAGCGCAGCGATGGCGGGCAGTATCTCGGCTTTGATAACAATGCCTCTTGATACAATCAAGACAAGATTGCAGGTTTTGGATGGGGATGGGGATGGAAGAAGAGGGCCAACAATTGGTCAGACATTGAGAAATTTAGTAAGGGAAGGCGGGTGGGCGGCGTGTTATCGAGGTTTGGCACCCCGGTGCGCGTCGATGTCAATGTCTGCAACGACAATGATCACCACATATGAACTTCTCAAACGGCTATCAACCAAGAATCAAGAGGGTTTAATAAGCTAA 1023 48.97 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAYSELPCIRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALECTKSYVGTATVRMGFPEATAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQSSSSIHYINGIDAFRKILDADGLRGLYRGFGISIMTYAPSNAMWWASYYVAQRLIWGGIGCYQAKKVVGEGNDNGANVYRPDSKTVMAVQGGSAAMAGSISALITMPLDTIKTRLQVLDGDGDGRRGPTIGQTLRNLVREGGWAACYRGLAPRCASMSMSATTMITTYELLKRLSTKNQEGLIS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4743887 4744909 + CmaCh08G007870.1 Cma08g00787 299482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00787 340 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Cma08g00787 340 Pfam Mitochondrial carrier protein 249 334 IPR018108 -
Cma08g00787 340 Pfam Mitochondrial carrier protein 126 211 IPR018108 -
Cma08g00787 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 241 330 IPR018108 -
Cma08g00787 340 Gene3D Mitochondrial carrier domain 30 338 IPR023395 -
Cma08g00787 340 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 336 - -
Cma08g00787 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 210 IPR018108 -
Cma08g00787 340 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Cma08g00787 340 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Cma08g00787 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Cma08g00787 340 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 336 - -
Cma08g00787 340 SUPERFAMILY Mitochondrial carrier 23 327 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00787 Cma-Chr8:4743887 Cma09g00357 Cma-Chr9:1469887 4.49E-161 dispersed
Cma17g00701 Cma-Chr17:5800205 Cma08g00787 Cma-Chr8:4743887 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00787 K15121 - csv:101210602 571.237