Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00788 ATGTCTTTGATACGTCGGAGAAAGGCAGTGGAAAAAGATACCAATATTCAGAAGGATGGAGATGACGATAAGAAGGAGAAGGTTAGCGGACAAGTAAAGGAAGTTAAGGCAAAGAAAAGGTGGTCGTGTGTTGATAGTTGTTGCTGGTTTGTTGGGTGCGTCTGTACGACATGGTGGCTCTTGATGTTCCTTTACAATGCGATGCCGGCATCTTTGCCTCAGTATGTGACGGAGGCAATCACGGGGCCATTGCCCGATCCGCCGGGTGTCAAATTGAAGAAAGAGGGGTTGAAGGTGAATCACCCAGTGGTGTTTGTGCCGGGAATCGTCACTGGTGGGCTTGAACTTTGGGAAGGCCATGAATGCGCGGAGGGTTTGTTCAGGAAGCGTCTCTGGGGCGGCACATTCGGCGAAGTTTATAAAAGACCTTCGTGCTGGGTAGAGCATATGTCATTGGATAATGAAACTGGATTAGATCCTCCAGGAGTTAGGGTTAGGCCTGTCAGTGGGCTTGTTGCTGCCGACTATTTTGCTCCTGGTTATTTTGTGTGGGCAGTCCTGATTGCTAACTTGGCTCGTATTGGTTATGAGGAAAAAACTATGTATATGGCTGCATATGACTGGAGAATTTCATATCAGAACACAGAGGTTAGAGATCAAACCCTCAGCAGAATAAAAAGTAACATAGAGCTGATGGTTGCCACAAATGGCGGGAAGAAGGCAGTGATAATTCCGCATTCGATGGGTGTTTTATACTTCCTGCACTTTATGAAGTGGGTTGAAGCACCGGCACCAATGGGTGGAGGGGGAGGACCAGACTGGTGCGCTAAGCATATAAAAGCAGTTATAAATATTGGTGGACCATTTCTAGGTGTTCCCAAAGCTGTTGCTGGGCTTTTCTCTGCTGAAGCTAAGGATATTGCAGTTGCCAGGGCTATTGCACCAGTCTTCTTGGACAACGATCTATTTCGCATTCAAACATTGCAGCATGTAATGAAGATGACTCGTACCTGGGATTCGACCATGTCAATGATACCAAAAGGAGGGGATGTTATATGGGGTGGCCTTGATTGGTCACCTGAAGATGGCCATGTTCCCAGCAGAAGAAGGCTAAAAAACAATGATACACATAATGGAGGTTATGACGGTGATGGAGATATTGTTCCCTCTTCAAAGAAAGTTCGCTATGGAAGAATTATATCGTTTGGGAAAGACATAGCTGAAGCAGATTCATCTGAGATTGAGAGGATTGAGTTTTTGGATGCTATCAAGGGTCACAATATTGCAAATGCTACGTGCAAAGACGTTTGGACTGAATACCATGACATGGGAATTGAGGGTATCAGAGCAATCTCAGATTACAAAGTTTATACCGCTGGATCGATCATAGATTTACTTCATTATGTTGCCCCACATACAATGGAACGTGGGAGTGCCCATTTCTCTTATGGGATTGCTGACAACTTGGATGATCCGAAATACAACCAATACAAGTATTGGTCAAACCCATTGGAGACAAGATTGCCAAATGCTCCGGACATGGAGATCTTTTCTTTGTATGGAGTTGGAATTCCGACCGAAAGAGCTTATGTTTATAAGCTCTCTCCTGCAGCTGAATGTTACATTCCATTTCAGATTGATACTGCAGCTAATGATGGTGATGAAGGCTGTCTGAAGGACGGAGTCTACACGGTCGATGGAGACGAAACTGTACCTGTTCTAAGTGCTGGCTACATGTGTGCAAAAGGGTGGCGTGGGAAAACCAGATTTAATCCTTCAGGAATCCGAACATACGTTAGAGAATACAATCACTCTCCCCCATCAAACTTGCTAGAAGGACGAGGAACACAGAGTGGTGCTCACGTCGATATAATGGGGAACTTTGCGTTGATCGAAGATATAATTCGAATAGCAGCGGGTGCACAAGGGGAAGATTTGGGAGGCGATCGAGTCTATTCTGATATCTTTAAATGGTGCAAGAACAACCAAGAAGAAATGGCAATGGATGGAGGTGGCGCAGTGCATAATCGTTCAGTCGAAGATGTTTTCAGTGATTTTAGAGGCCGAAGAAGTGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTTTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGTTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAACTCCCAGAGCCAGCATTGGGTATTAATTTTGCAAGAGATGGGATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGCGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAGCTGATAGGAGGCGGCTTTTTAATATGATAAACGATTTGCCAACTGTATTTGAAGTAGTCACTGGTGTTGCAAAGAAACCAGTCAAGGAAAAGTCGTCGAGTGCTAATGGTAGCAGATCCAAGTCCAACTTTAAAACGAGGGAAGCTGAAATCCATGGAATGTATTCAAGGCAACCGCAGGCAAGGGAAGAGGTAGAGGCCTTGTATCAAGAAGACGAAGACGAGCACGGAGACACCTTGTGTGGGGCATGTGGTGAGAATTATGCATCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAGTGGTTCCATGGGAAATGCGTTAGAATAACTCCTGCCAAAGCAGAGCACATCAAGCAGTACAAATGCCCATCCTGCAGCCACAAGAGAGGCCGCGTTTGA 2757 44.87 MSLIRRRKAVEKDTNIQKDGDDDKKEKVSGQVKEVKAKKRWSCVDSCCWFVGCVCTTWWLLMFLYNAMPASLPQYVTEAITGPLPDPPGVKLKKEGLKVNHPVVFVPGIVTGGLELWEGHECAEGLFRKRLWGGTFGEVYKRPSCWVEHMSLDNETGLDPPGVRVRPVSGLVAADYFAPGYFVWAVLIANLARIGYEEKTMYMAAYDWRISYQNTEVRDQTLSRIKSNIELMVATNGGKKAVIIPHSMGVLYFLHFMKWVEAPAPMGGGGGPDWCAKHIKAVINIGGPFLGVPKAVAGLFSAEAKDIAVARAIAPVFLDNDLFRIQTLQHVMKMTRTWDSTMSMIPKGGDVIWGGLDWSPEDGHVPSRRRLKNNDTHNGGYDGDGDIVPSSKKVRYGRIISFGKDIAEADSSEIERIEFLDAIKGHNIANATCKDVWTEYHDMGIEGIRAISDYKVYTAGSIIDLLHYVAPHTMERGSAHFSYGIADNLDDPKYNQYKYWSNPLETRLPNAPDMEIFSLYGVGIPTERAYVYKLSPAAECYIPFQIDTAANDGDEGCLKDGVYTVDGDETVPVLSAGYMCAKGWRGKTRFNPSGIRTYVREYNHSPPSNLLEGRGTQSGAHVDIMGNFALIEDIIRIAAGAQGEDLGGDRVYSDIFKWCKNNQEEMAMDGGGAVHNRSVEDVFSDFRGRRSGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKADRRRLFNMINDLPTVFEVVTGVAKKPVKEKSSSANGSRSKSNFKTREAEIHGMYSRQPQAREEVEALYQEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSHKRGRV 918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4745716 4754935 - CmaCh08G007880.1 Cma08g00788 299483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00788 918 CDD PHD_AL_plant 864 914 IPR044104 -
Cma08g00788 918 MobiDBLite consensus disorder prediction 1 25 - -
Cma08g00788 918 Gene3D alpha/beta hydrolase 123 330 IPR029058 -
Cma08g00788 918 SUPERFAMILY FYVE/PHD zinc finger 854 916 IPR011011 -
Cma08g00788 918 SMART PHD_3 864 912 IPR001965 -
Cma08g00788 918 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 855 913 IPR013083 -
Cma08g00788 918 Pfam Lecithin:cholesterol acyltransferase 127 626 IPR003386 GO:0006629|GO:0008374
Cma08g00788 918 ProSiteProfiles Zinc finger PHD-type profile. 862 914 IPR019787 -
Cma08g00788 918 ProSitePatterns Zinc finger PHD-type signature. 865 911 IPR019786 -
Cma08g00788 918 SUPERFAMILY alpha/beta-Hydrolases 81 489 IPR029058 -
Cma08g00788 918 Pfam PHD-finger 865 913 IPR019787 -
Cma08g00788 918 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 17 663 - -
Cma08g00788 918 PANTHER PHOSPHOLIPID:DIACYLGLYCEROL ACYLTRANSFERASE 1 17 663 - -
Cma08g00788 918 Pfam Alfin 678 805 IPR021998 GO:0006355|GO:0042393
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00788 Cma17g00700 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00152 Cma-Chr4:750004 Cma08g00788 Cma-Chr8:4745716 7.81E-96 dispersed
Cma04g00878 Cma-Chr4:4526704 Cma08g00788 Cma-Chr8:4745716 5.40E-103 dispersed
Cma04g01114 Cma-Chr4:5756167 Cma08g00788 Cma-Chr8:4745716 7.37E-97 dispersed
Cma06g00227 Cma-Chr6:1163652 Cma08g00788 Cma-Chr8:4745716 1.46E-84 dispersed
Cma08g00788 Cma-Chr8:4745716 Cma12g01318 Cma-Chr12:10095380 6.14E-112 dispersed
Cma09g00300 Cma-Chr9:1226398 Cma08g00788 Cma-Chr8:4745716 4.81E-06 transposed
Cma18g00557 Cma-Chr18:3650247 Cma08g00788 Cma-Chr8:4745716 5.73E-07 transposed
Cma20g00541 Cma-Chr20:2606860 Cma08g00788 Cma-Chr8:4745716 0 transposed
Cma17g00700 Cma-Chr17:5789057 Cma08g00788 Cma-Chr8:4745716 2.94E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35525 PF02450 LCAT 1.10E-63 CL0028 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00788 K00679 - csv:101222563 1282.7