Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00795 ATGACCATTGAAGAACCAGGTGCAAACCACCCTTCAGATCATATATTGGATTGGTTAGCGGATTCAGTTCCTTTCTTTTCTTCCCCGTTCCCGGATGATTCCTACAACTCTAGCTCTATAAACTGCTATCAATGGTGGGATGAGAACCAAGACATAGGCCAAGATCTGATTAATGGCTGTCTAAGCAGTTCCCCCACCACTGTCAGTACTAAACCACCTAACACTTCCACTTCCCATCACTTGACGCCATCTGATTTGACTAAGAAAAGAAAAGCTCCGGATGATACAGTTCATAAACCATCGCAAACCCAACAGAATCAGAGGAAGAACCAGAACAATCAGAGCAAAAATGGTGCAGATAAAGGCAGTGGAGCTGTTGAAGGTGTGACTGTGATAAAGAAATCAGTGGGGAACAAAAGGAATTCATCAAAAGCCACAGGGAATAACAATCATAATGGAAGTAACAAGGAAGGAAGGTGGGCAGAGCAATTGCTAAATCCTTGTGCTAATGCTATCATAAAAGGGGATGCAACAAGAGTACATCACCTTCTTTGTGTTCTTCAAGAGCTCGCCTCGCCCACCGGCGATGCTAACCACCGGCTCGCCGCCTATGGTCTCCGAGCTTTGGCCCATTACCTGTCCTCCAATTCTTCATGCTATTCTTCTTCTTCCACAGTTGCGCCGGTTACTTTTGCTTCGACGGACCTTCGATTCTTTCAGAGGTCGTTGATTAAATTCCACGAGGTGAGTCCATGGTTTGCTTTTCCGAATAACATCGCAAATTCTTCGATTCTCCACATTCTCTCTGAAGAACCTAATCGCTCGCGCAATCTTCACATTCTTGATATCGGGGTTTCTCATGGTGTGCAATGGCCGACGCTGCTCGAGGCCTTAACTCGCCGCTCCGGTGGACCCCCGCCGCTAATTCGCCTCACAGTCATCGCTCCAACCGTCGAACATGATCAAAATGCAGAGACGCCGTTTTCGATTGGTCCACCGGGAGACAACATCTCCTCTCGGCTTCTTAGCTTCGCGAAATCATTAAACATCAATTTACAGATCAACCGCCTCGACAATCGCTCGCTACAGAGTTTCAATTCGCAAGTAATCGGCAAGTTACCGGACGAAATCTTAATCGTTTGCGCACAGTTCAGACTCCACCAATTGAAACACTACGCTCCAGACGAAAGATTCGAGTTCTTACAAAACCTAAGAAAGATAGAACCGAAAGCTGTGATTCTAAGCGAAAACAACATGGCATGTAGCTGTAACAACTGTGGAAATTTCGACACCGGATTCACAAGAAAAGTTGAATACCTATGGAGATTCCTGGATTCAACAAGCTCCGCATTCAAAGGTCGAGAAAGCGAGGAAAGAAAGGTGATGGAAGGCGAAGCCGCAAGGGGGCTGACGAACCAAGGCGAAATGAACGAGGAAATGGAAAAATGGTGCGAAAGAATGAGAAATGCTGGATTTGCAAGAAAGTTGTTCGGTGAAGACACCATTGATACGGCTCGAGCTTCAATGAGAAGGTATGATAACAACTGGGAGATGAGAGTTGAAGAGAAAGATGGATGCGTAGGGCTATGGTGGAAAGGGCAACCTGTTTCGTTTTGTTCATTTTGGAAGTTGGGGATGAAATCCAATGGCGGTTGA 1656 46.01 MTIEEPGANHPSDHILDWLADSVPFFSSPFPDDSYNSSSINCYQWWDENQDIGQDLINGCLSSSPTTVSTKPPNTSTSHHLTPSDLTKKRKAPDDTVHKPSQTQQNQRKNQNNQSKNGADKGSGAVEGVTVIKKSVGNKRNSSKATGNNNHNGSNKEGRWAEQLLNPCANAIIKGDATRVHHLLCVLQELASPTGDANHRLAAYGLRALAHYLSSNSSCYSSSSTVAPVTFASTDLRFFQRSLIKFHEVSPWFAFPNNIANSSILHILSEEPNRSRNLHILDIGVSHGVQWPTLLEALTRRSGGPPPLIRLTVIAPTVEHDQNAETPFSIGPPGDNISSRLLSFAKSLNINLQINRLDNRSLQSFNSQVIGKLPDEILIVCAQFRLHQLKHYAPDERFEFLQNLRKIEPKAVILSENNMACSCNNCGNFDTGFTRKVEYLWRFLDSTSSAFKGRESEERKVMEGEAARGLTNQGEMNEEMEKWCERMRNAGFARKLFGEDTIDTARASMRRYDNNWEMRVEEKDGCVGLWWKGQPVSFCSFWKLGMKSNGG 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4811559 4813214 + CmaCh08G007950.1 Cma08g00795 299490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00795 551 MobiDBLite consensus disorder prediction 98 120 - -
Cma08g00795 551 Pfam GRAS domain family 162 543 IPR005202 -
Cma08g00795 551 MobiDBLite consensus disorder prediction 63 82 - -
Cma08g00795 551 MobiDBLite consensus disorder prediction 83 97 - -
Cma08g00795 551 MobiDBLite consensus disorder prediction 63 157 - -
Cma08g00795 551 ProSiteProfiles GRAS family profile. 152 543 IPR005202 -
Cma08g00795 551 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 2 543 IPR030015 -
Cma08g00795 551 MobiDBLite consensus disorder prediction 135 157 - -
Cma08g00795 551 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 543 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00795 Cma-Chr8:4811559 Cma03g00918 Cma-Chr3:6636169 5.48E-42 dispersed
Cma08g00795 Cma-Chr8:4811559 Cma08g00189 Cma-Chr8:1066984 4.81E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35526 PF03514 GRAS 1.40E-76 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00795 - - csv:101211590 936.406