Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00830 ATGTGGTGGAGATCGGCTTCTTTCATCCTGGACAAGCAGCAAACTGAAGGCGTTTCAAAGCCACCTGAAACCCTTTCTATTTCCCCGCCCGTCGACGAATCTTCTATGGCGGACACTTTCCAGAACCCTAACCCTAAAATTTCTGCCTATTACCAAAGTAGGGCTTCTCACACCGCCGTCGTCACCAGTGATTGGCTCGCCCAGGCGCAAGCTGCTGTCGGATTCCCGACCGACGAACAATTGTTATCGGAAGCTGATGTTAAGGACTCTGAATCTGGAAAGCCTTTCAGTGTAATCGATGAGTTTAATAACTGGAGGAAACAGCCGGATTTGGCCGAGGCCGTCGCAGCTATTCGGTCTTTGGCGGCTGTAATACGGTCTAGTCAGGCCACGACAATGATGGAGCTCGAAATTGAGCTGAAAAAGGCCTCGGACTCTCTGAAGTCATGGGATACAACTTCAATATCATTGACGGCTGGCTGTGATTTGTTCATGCGGTATGTAACTAGAACATCGGCTTTAGAATATGAGGATTTCAAGTCTGCTAAGTCTCGCCTGATTGAACGTGCAGAAAAGTTTGGGGAGATATCTTGTAAGGCACGGAGAATTATTGCAATGCTCAGTCAGGATTTCATTTTTGATGGTTGTACAATTTTGGTCCATGGTTTCTCTAGAGTTGTTATGGAAGTTCTGAGGTTAGCTGCACAGAATAAGAAGCTCTTTAGAGTGTTTTGCACAGAAGGAAGACCAGACAGGACAGGGTTGCGTCTATCCAATGAGCTAGCTAAGCTTGATGTTCCTGTAAAGCTCCTAATTGACTCAGCAGTAGCATATACGATGGATGAGGTTGACATGGTTCTAGTTGGGGCTGATGGAGTTGTTGAAAGTGGAGGTATAATCAACATGATGGGCACCTATCAAATAGCATTAGTGGCACATAGCATGAACAAACCGATGTATGTAGCTGCTGAGAGTTATAAGTTTGCCCGACTCTACCCATTAGATCAGAAAGACATGGCCCCTGCCCTGCGTCCCATTGATTTTGGGGTTCCTATCCCATCCAAGGTTGAAGTGGAAAAATCTGCTCGTGATTATACTCCTCCTCAATACCTTACACTTCTCTTCACAGATTTGGGCGTTCTTTCTCCATCTGTGGTGAGTGACGAGCTCATCCAACTATATTTATAG 1188 45.96 MWWRSASFILDKQQTEGVSKPPETLSISPPVDESSMADTFQNPNPKISAYYQSRASHTAVVTSDWLAQAQAAVGFPTDEQLLSEADVKDSESGKPFSVIDEFNNWRKQPDLAEAVAAIRSLAAVIRSSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFKSAKSRLIERAEKFGEISCKARRIIAMLSQDFIFDGCTILVHGFSRVVMEVLRLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEVDMVLVGADGVVESGGIINMMGTYQIALVAHSMNKPMYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVEKSARDYTPPQYLTLLFTDLGVLSPSVVSDELIQLYL 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5028613 5033476 - CmaCh08G008300.1 Cma08g00830 299525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00830 395 Pfam Initiation factor 2 subunit family 109 383 IPR000649 GO:0044237
Cma08g00830 395 MobiDBLite consensus disorder prediction 13 37 - -
Cma08g00830 395 Gene3D - 199 395 IPR042529 -
Cma08g00830 395 SUPERFAMILY NagB/RpiA/CoA transferase-like 111 394 IPR037171 -
Cma08g00830 395 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 39 395 - -
Cma08g00830 395 Gene3D - 95 196 IPR042528 -
Cma08g00830 395 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 39 395 - -
Cma08g00830 395 Coils Coil 133 153 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02210 Cma-Chr4:15425396 Cma08g00830 Cma-Chr8:5028613 6.20E-22 dispersed
Cma08g00830 Cma-Chr8:5028613 Cma11g00247 Cma-Chr11:1252220 2.44E-11 dispersed
Cma08g00830 Cma-Chr8:5028613 Cma10g00256 Cma-Chr10:1139004 2.51E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00830 K03239 - csv:101211420 735.332