Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00837 ATGGGGGAAAAGTGGGTGATTGATTTGAGGCGCTCAAATTCCTGTTCTGTGCAGAAAGGGAGGACGATGGGTTTAGGGAGTAGAGAGAAGAAAATGAATTGGAGGTGGATGGAGGTGGTTTCTCTCATCGTTCTTTGCATTCTGGGGTTGAAGCCTACCTCCATTCAAGCTGCCACAGATCCATCAGATGCCTCTGCTTTAAGAGTTTTGTACACCAGCTTGAAGTCGCCCCCTCAGTTAACCCAGTGGAATGCTAATGGCGATGATCCATGTGGACAATCATGGAAAGGGATTACTTGCTCTGGCACACGGGTTACAGAAATAAACTTGTCTGGCCTCGCTCTCAGTGGATCGATGGGATACCAACTCGCAAGTTTGACATCGTTAACCAACCTAGATATGAGCAATAACAATATTGGAGGCAATATAGTCTACCAACTTCCACCATTCCTGCAGAGACTAAATCTTGCTCAAAACAGCTTCACTGAAGGCATCCCTTATTCCATTTCACAGATGACAACTCTTCGATACCTAAATCTCAGTCATAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATCCACATTGGATCTGTCTTTCAATGCTATGTCAGGCGAACTGCCTCAGAGTTTTAGCTCGCTTTCGAGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTAATGTCCTTGCAAATCTTCCTCTTGATAACCTGAATGTTGAAAACAACCGTTTCTCTGGCTGGATCCCTGAGCAACTGAAGAGCATCAATCTTCAGACAAATGGCAACTCCTGGAACTCAGGTCCTGCACCCCCTCCTCCTCCTGGTACACCTCCAGCAACTAGAAGGAACCGAAGTCACGATTCTGGTGGCAATAGTCCATCAAATGGTGGTTCTGGTGAAGGTCAGAAATCCGGAATTAGTAGTGGTGCCATTGCAGGAATTGTCATCTCTGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCATTGTTAGGAAGAGATCCAAGAGATCATCATCTGCAGACATTGAAAAGCTCGACAATCAACCCCCGCAACCTCATCAAATGACTCCAGCACAAGAAATAAAGTCCGAAGAAACTTCCTCTACATTTTATCCAACAACATTTGATACTTCTGCTGCAATTAATCTCAAACCCCCTCCTAGTGATCTTCATAAATCACTTGATGAAGACGACTTTGCTAAAAGAGCTGTTGTCAAGAAGGCTAATGCAGCTCCTATTAATGTAAAGTCATATTCAATAGCAGACCTGCAATTGGCTACGGGCAGCTTCAATTTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTTTATCGGGCTGAGTTTGATGACGGGAAGATTCTTGCCGTGAAAAAAATCAATTCGGCTGTACTACCTGGGGACTTATCTGAAGATTTCACCGACATTGTTTCGAAAGTCTCCGAGTTACACCATCCCAATATAACCGAGCTCGTGGGTTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGATTTCTTGCATCATTCAGACGAATACAACCAGCCACTGATATGGAATTCTCGTGTTAAGATTGCTTTGGGAACTGCCCGTGCACTAGAGTATCTTCATGAAGTTTGCTCCCCATCAATTGTTCATAGAAACATCAAGTCTGCAAACATACTGCTGGATGCGGAACTCAGCCCCCACCTCTCTGATTCTGGACTGGAAAGCTTTGCACCAAATACAGATCAGGCACTGGATCACAATGCAAGTTCAGGATACACTGCCCCCGAGGTCACGATGTCTGGTCATTATACACTGAAAAGCGATGTCTACAGCTTTGGAGTAGTCATGTTGGAACTGTTGACTGGGCGCAAACCATTCGACAGTTCAAGATCAAGGACCGAGCAATCTTTGGTTCGATGGGCTACACCCCAGCTTCATGACATTGATGCGTTGACCAAGATGGTCGATCCAGAACTCCATGGACTATATCCAGTTAAATCCCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTCCAGACCGAACCAGAGTTCAGACCTCCAATGTCGGAAGTGGTGGAAGCATTGGTTCGACTTGTGCAGCGAGCTAACATGAGTAAGAGAACATATGGAAATGACAATGCAGCAGCGTCTCCCAGAGGAGGGGGGGACATGGGTGGGGAGGATACACCATAA 2247 45.35 MGEKWVIDLRRSNSCSVQKGRTMGLGSREKKMNWRWMEVVSLIVLCILGLKPTSIQAATDPSDASALRVLYTSLKSPPQLTQWNANGDDPCGQSWKGITCSGTRVTEINLSGLALSGSMGYQLASLTSLTNLDMSNNNIGGNIVYQLPPFLQRLNLAQNSFTEGIPYSISQMTTLRYLNLSHNQLQNPLIDMFGQLTSLSTLDLSFNAMSGELPQSFSSLSSISTMNLQNNQFTGTINVLANLPLDNLNVENNRFSGWIPEQLKSINLQTNGNSWNSGPAPPPPPGTPPATRRNRSHDSGGNSPSNGGSGEGQKSGISSGAIAGIVISVLVVGAVVAFFIVRKRSKRSSSADIEKLDNQPPQPHQMTPAQEIKSEETSSTFYPTTFDTSAAINLKPPPSDLHKSLDEDDFAKRAVVKKANAAPINVKSYSIADLQLATGSFNFENLLGEGSFGRVYRAEFDDGKILAVKKINSAVLPGDLSEDFTDIVSKVSELHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHHSDEYNQPLIWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFAPNTDQALDHNASSGYTAPEVTMSGHYTLKSDVYSFGVVMLELLTGRKPFDSSRSRTEQSLVRWATPQLHDIDALTKMVDPELHGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNAAASPRGGGDMGGEDTP 748
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5074451 5079376 - CmaCh08G008370.1 Cma08g00837 299532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00837 748 MobiDBLite consensus disorder prediction 349 378 - -
Cma08g00837 748 CDD STKc_IRAK 447 716 - -
Cma08g00837 748 Gene3D Transferase(Phosphotransferase) domain 1 520 736 - -
Cma08g00837 748 MobiDBLite consensus disorder prediction 727 748 - -
Cma08g00837 748 Pfam Leucine rich repeat N-terminal domain 61 101 IPR013210 -
Cma08g00837 748 MobiDBLite consensus disorder prediction 269 316 - -
Cma08g00837 748 Pfam Leucine Rich repeat 126 144 IPR001611 GO:0005515
Cma08g00837 748 Pfam Leucine Rich repeat 172 187 IPR001611 GO:0005515
Cma08g00837 748 MobiDBLite consensus disorder prediction 292 316 - -
Cma08g00837 748 MobiDBLite consensus disorder prediction 354 378 - -
Cma08g00837 748 PANTHER OS01G0253100 PROTEIN 49 734 IPR045271 GO:0004714|GO:0006468
Cma08g00837 748 ProSitePatterns Protein kinases ATP-binding region signature. 447 470 IPR017441 GO:0005524
Cma08g00837 748 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 49 734 - -
Cma08g00837 748 SUPERFAMILY L domain-like 59 265 - -
Cma08g00837 748 Gene3D Ribonuclease Inhibitor 60 284 IPR032675 -
Cma08g00837 748 ProSiteProfiles Protein kinase domain profile. 441 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00837 748 Gene3D Phosphorylase Kinase; domain 1 403 518 - -
Cma08g00837 748 SUPERFAMILY Protein kinase-like (PK-like) 424 713 IPR011009 -
Cma08g00837 748 Pfam Protein tyrosine and serine/threonine kinase 442 713 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00022 Cma08g00837 CCT
Cma08g00837 Cma17g00644 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00837 Cma-Chr8:5074451 Cma18g00568 Cma-Chr18:3822270 0 dispersed
Cma01g00022 Cma-Chr1:86530 Cma08g00837 Cma-Chr8:5074451 0 wgd
Cma14g01226 Cma-Chr14:9734658 Cma08g00837 Cma-Chr8:5074451 0 wgd
Cma17g00644 Cma-Chr17:5444729 Cma08g00837 Cma-Chr8:5074451 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68762 PF07714 PK_Tyr_Ser-Thr 1.20E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00837 - - csv:101213107 1118.61