Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00846 ATGACGTCTCGTGGTTCATCGGCTTCGAGCAATGGCCTATTTCCGCTCAATGCTTCCACGTCCGGCCGGCAAGACGATGTTGAGGCTGGGCTCTCCTCCGGCAAAAGCATTAACAAGGAGGAGGAAGAAGAGGGTTCCGATCCTTTTGATGTCGACAATACCAAAAATGTCCCGCTCGAGATACTCAAGCGATGGAGGCAAGCTGCGTTGGTGCTTAATGCATCTCGGAGATTTCGTTATACTTTGGATTTAAAAAAGGAGGAAGAGAAAGAGAGAAGAAGAAGGATGATTAGAGCCCACTCTCAAGTTATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAACTGGTTTCTCAGTACCACCTCCAACGTCAACTGGTGACTATGGCATTAATTTAGAACATCTTGTCTCACTGACCCGTGAACAAAACTTTTCTTCTCTACAACAATATGGAGGAGTCAAAGGCTTATCAAATTTATTGAAAACAAATACCGATAAAGGAATACCGGGGGATGAAACTGATTTACTAAAAAGAAGAAATACATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGTTTCTTGAGATTTCTTTGGGAAGCCTGGCAAGATTTAACCCTAATCATCTTGATTATAGCTGCAGTGGCATCATTAGCTTTGGGAATGAAAACAAAGGGTGTAAAGGAAGGATGGTATGACGGAGGAAGCATTTCCTTTGCTGTGTTTCTTGTCATAATGGTCACAGCGGTCAGTGATTATCGACAGTCTCTTCAGTTTCAAAACTTAAATGAGGAAAAGCAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTTTCAATATTTGATATCGTTGTTGGAGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTAATCACCGGTCATTCACTTGCCATAGATGAATCTAGCATGACTGGCGAAAGCAAGATTGTTCGCAAGGATCAGAAGGCACCCTTTATGATGTCTGGTTGTAAAGTTGCAGATGGAGTTGGTACCATGATGGTCACTGCTGTTGGAATCAATACTGAATGGGGATTGTTGATGGCCAGCATCTCAGAAGATACTGGGGAAGAAACTCCCTTGCAGGTTCGGTTGAACGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGCGGTTGCAGTTGCTGTGCTAGCTATCCTTTTGGGCAGATACTTCACTGGAAATACACATGATGCAAATGGAAACATTGAATTTCAGCGTGGGCATATGAGTCTAGGCGATGCTGTAAATGGAGTAATTAGAATTGTTACTGTTGCTGTTACTATTGTGGTTGTTGCGGTGCCTGAAGGACTTCCTTTGGCTGTCACTCTAACATTAGCATACTCCATGAGGAAAATGATGGCCGATAAAGCATTGGTTCGTAGACTGTCTGCTTGCGAAACTATGGGTTCTGCAACAACAATTTGCAGTGATAAGACTGGAACGTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGTCAAGAAAATGATGAATCCCCCAGATGAGCCACTGGAGTTGCAGTCATTGGTTCTCAATCTGCTATATGAGGGCATTGCTCAGAACAGCGCAGGCAATGTTTTTGTTGCTATGGATGGGAGAAGTATAGAGGTCACTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTCAAGCTGGGAATGAAGTATGATGTTGTCAAATCAGAGTCTGAAGTTCTCCATGTTGTCCCGTTCAATTCAGAAAAGAAGCGAGGAGGTGTTGCGATAAAGCGGGCTGAATCAGAAGTCTACATACACTGGAAAGGAGCGGCAGAGATGGTCTTATCTTCTTGTACAAAGTATATGGGAATGAATTGTGAAGTGCACTCAATGGAAGGCAATGAGGATTATTTTAAGGCAGCCATTAATGATATGGCTGCAAGAAGTTTGCGTTGTGTTGCGATTGCATATAGACCATATGAATTAGAGAAGGTTCCAGTAGATGAACAGGGTTTGGATCAATGGGATTTGCCTGCTGATGATCTTATTCTGCTTGCAATTGTTGGTATAAAGGATCCTTGTCGTGCTGGTGTTAAAGAGGCTGTGAAAGTGTGCACAGATGCTGGTGTCAAGGTGCGAATGGTAACTGGAGACAATATACAGACCGCCAAAGCTATAGCAATAGAGTGTGGAATACTAAGCGCAACAGACGATGCTTCTGAGCCGACAGTAATTGAAGGAAAAGAATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAGTTGCCCCGAAAATAACGGTGATGGGGAGGTCTTCACCCAATGACAAGCTCTTGCTTGTTCAAGCATTAAGAAAGGGAGGAGACGTCGTTGCTGTAACAGGCGATGGGACAAATGATGCCCCTGCACTCCACGAGGCAGATATCGGTCTTTCTATGGGCATACAAGGGACTGAAGTTGCGAAAGAAAGTTCTGATATTGTTATCTTGGATGATAACTTTGCTTCAGTCGTAAAGGTTGTCAGGTGGGGGCGTTCTGTGTATGCAAACATTCAGAAGTTCATCCAGTTTCAGCTCACTGTAAATGTTGCCGCTCTTGTGATTAATGTTGTTGCAGCTGTGTCTTCCGGTGATGTTCCTTTAAATACTGTGCAGCTTCTCTGGGTTAACCTGATCATGGACACACTCGGTGCTCTAGCATTAGCTACTGAACCACCAACGGACCACTTGATGCATCGGTCACCTGCTTTGTATCAAGTTGCTGTCCTTCTTGTTCTCAACTTCTATGCCACTGATATTCTTCAATTGAATACTGATAGCAAGGAGCACGCCTTTAATGTGAAGAATACAGTGATTTTCAATGCCTTTGTCCTCTGCCAAATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAACGTATTCAGTGGCGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACGACGTTCTTGCTTCAGATCATCATCGTCGAATTTCTAGGAAAATTTACTTCCACAGTAAAACTTGATGCGAAGCAATGGCTTATCTGCATTGCTATCGGCCTTGTGAGCTGGCCTCTGGCTGTCGTTGGCAAACTGATTCCAGTTCCTGAGACTCCATTGGGTAAATACTTCACAAAGCTAGTTCAACGGTACAGGAGGTCACATGACATCATGCTTGCGTAA 3222 43.23 MTSRGSSASSNGLFPLNASTSGRQDDVEAGLSSGKSINKEEEEEGSDPFDVDNTKNVPLEILKRWRQAALVLNASRRFRYTLDLKKEEEKERRRRMIRAHSQVIRAALLFKLAGEQQTGFSVPPPTSTGDYGINLEHLVSLTREQNFSSLQQYGGVKGLSNLLKTNTDKGIPGDETDLLKRRNTFGSNTYPRKKGRSFLRFLWEAWQDLTLIILIIAAVASLALGMKTKGVKEGWYDGGSISFAVFLVIMVTAVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDIVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKAPFMMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAVAVLAILLGRYFTGNTHDANGNIEFQRGHMSLGDAVNGVIRIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVVKKMMNPPDEPLELQSLVLNLLYEGIAQNSAGNVFVAMDGRSIEVTGSPTEKAILSWAVKLGMKYDVVKSESEVLHVVPFNSEKKRGGVAIKRAESEVYIHWKGAAEMVLSSCTKYMGMNCEVHSMEGNEDYFKAAINDMAARSLRCVAIAYRPYELEKVPVDEQGLDQWDLPADDLILLAIVGIKDPCRAGVKEAVKVCTDAGVKVRMVTGDNIQTAKAIAIECGILSATDDASEPTVIEGKEFRVLSEKEREQVAPKITVMGRSSPNDKLLLVQALRKGGDVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPALYQVAVLLVLNFYATDILQLNTDSKEHAFNVKNTVIFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFLLQIIIVEFLGKFTSTVKLDAKQWLICIAIGLVSWPLAVVGKLIPVPETPLGKYFTKLVQRYRRSHDIMLA 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5121305 5135595 - CmaCh08G008460.1 Cma08g00846 299541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00846 1073 Gene3D - 930 1049 - -
Cma08g00846 1073 Gene3D - 177 372 - -
Cma08g00846 1073 Pfam haloacid dehalogenase-like hydrolase 493 817 - -
Cma08g00846 1073 SUPERFAMILY HAD-like 494 908 IPR036412 -
Cma08g00846 1073 SMART Cation_ATPase_N_a_2 152 226 IPR004014 -
Cma08g00846 1073 Gene3D - 493 848 IPR023214 -
Cma08g00846 1073 Gene3D - 59 112 - -
Cma08g00846 1073 SFLD C1.7: P-type atpase like 478 855 - -
Cma08g00846 1073 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Cma08g00846 1073 PRINTS P-type cation-transporting ATPase superfamily signature 718 728 - -
Cma08g00846 1073 PRINTS P-type cation-transporting ATPase superfamily signature 827 839 - -
Cma08g00846 1073 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Cma08g00846 1073 PRINTS P-type cation-transporting ATPase superfamily signature 803 822 - -
Cma08g00846 1073 PRINTS P-type cation-transporting ATPase superfamily signature 696 707 - -
Cma08g00846 1073 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Cma08g00846 1073 PANTHER CATION TRANSPORTING ATPASE 37 1063 - -
Cma08g00846 1073 MobiDBLite consensus disorder prediction 1 27 - -
Cma08g00846 1073 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1048 IPR023298 -
Cma08g00846 1073 SUPERFAMILY Calcium ATPase, transduction domain A 273 369 IPR008250 -
Cma08g00846 1073 Pfam Cation transporting ATPase, C-terminus 888 1046 IPR006068 -
Cma08g00846 1073 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 503 700 IPR023299 GO:0000166
Cma08g00846 1073 Pfam E1-E2 ATPase 272 474 - -
Cma08g00846 1073 PANTHER CALCIUM-TRANSPORTING ATPASE 37 1063 - -
Cma08g00846 1073 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 435 518 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma08g00846 1073 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 770 883 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma08g00846 1073 Pfam Ca2+-ATPase N terminal autoinhibitory domain 45 89 IPR024750 GO:0005516
Cma08g00846 1073 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 140 1048 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cma08g00846 1073 Gene3D - 204 925 - -
Cma08g00846 1073 MobiDBLite consensus disorder prediction 1 53 - -
Cma08g00846 1073 Gene3D - 506 703 IPR023299 GO:0000166
Cma08g00846 1073 CDD P-type_ATPase_Ca_PMCA-like 178 924 - -
Cma08g00846 1073 PRINTS Sodium/potassium-transporting ATPase signature 875 896 - -
Cma08g00846 1073 PRINTS Sodium/potassium-transporting ATPase signature 239 259 - -
Cma08g00846 1073 PRINTS Sodium/potassium-transporting ATPase signature 489 510 - -
Cma08g00846 1073 PRINTS Sodium/potassium-transporting ATPase signature 615 633 - -
Cma08g00846 1073 Pfam Cation transporter/ATPase, N-terminus 154 221 IPR004014 -
Cma08g00846 1073 SFLD p-type atpase 478 855 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00846 Cma-Chr8:5121305 Cma12g00923 Cma-Chr12:7124315 0 dispersed
Cma08g00846 Cma-Chr8:5121305 Cma05g00724 Cma-Chr5:4038867 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00846 K01537 - csv:101214801 1788.85