Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00850 ATGCGCAATTACTTGTACAGAATTAATCGAGGTTTTTCTGGCGGGAGCAGTGAAATGGACGGTATTCATGCGAGCGATGGACGGATGCATATGAGTCATGCACAGCATTCGATGCACACACAATCTGTGCAAGAACAGGAACATCATGACTTGCATTACATGAGTAATGGGAATGGAATGGCCGATGAGCATGAAAATGAAGGTCACGGTATCATGGTTGTGGAAAGGGAAGCTCCATCCGACCATGGTGATCTTGCCGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGATCAGCTTACCCTGTCATATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTTGCCCGAAAAGGTTCAAGCTGTGTTATTATTATTGGGAGGTCGCGAAGTACCTTTGCGTGTTCCCTCAATCCCAATAACTAATCAACCAAATGATAGGCATCTCACTGATGAAGCATTTAACCAGGCACTTGCCATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGTCAGTTCACATCTTCCAAACCCATTCATGAAGATTCATTATCGGCCACAACAAGTTGGGAATCAAATGAGACTTGGTGCTCTGATGGAAATGGATCCCATCAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCTACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGTTTCCGCTCCTTCTAATTTGCATTGCTGACTGTAAGGGAACTCTGCGGGACCTCTCAAAAGCACCAAACCAGGGTGGACAAGCTTCAAGCTTCAATAGGAATGAGAATGTTGTGCAGAATGGAGATTCTGAGTCCAACCCAAAAAGTGCATAG 999 44.84 MRNYLYRINRGFSGGSSEMDGIHASDGRMHMSHAQHSMHTQSVQEQEHHDLHYMSNGNGMADEHENEGHGIMVVEREAPSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVLPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALAIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSLSATTSWESNETWCSDGNGSHQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKFPLLLICIADCKGTLRDLSKAPNQGGQASSFNRNENVVQNGDSESNPKSA 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5167220 5172324 + CmaCh08G008500.1 Cma08g00850 299545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00850 332 Pfam GATA zinc finger 248 282 IPR000679 GO:0006355|GO:0043565
Cma08g00850 332 Gene3D - 238 316 IPR013088 GO:0006355|GO:0008270
Cma08g00850 332 PANTHER GATA TRANSCRIPTION FACTOR 28 18 318 IPR045280 GO:0006355
Cma08g00850 332 CDD ZnF_GATA 248 282 IPR000679 GO:0006355|GO:0043565
Cma08g00850 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 244 282 - -
Cma08g00850 332 SMART tify_2 96 131 IPR010399 -
Cma08g00850 332 ProSiteProfiles Tify domain profile. 96 131 IPR010399 -
Cma08g00850 332 ProSiteProfiles CCT domain profile. 172 214 IPR010402 GO:0005515
Cma08g00850 332 SMART GATA_3 242 297 IPR000679 GO:0006355|GO:0043565
Cma08g00850 332 MobiDBLite consensus disorder prediction 302 332 - -
Cma08g00850 332 Pfam tify domain 102 130 IPR010399 -
Cma08g00850 332 Pfam CCT motif 172 214 IPR010402 GO:0005515
Cma08g00850 332 ProSitePatterns GATA-type zinc finger domain. 248 275 IPR000679 GO:0006355|GO:0043565
Cma08g00850 332 PANTHER GATA TRANSCRIPTION FACTOR 28 18 318 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00850 Cma17g00633 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00850 Cma-Chr8:5167220 Cma11g01674 Cma-Chr11:11008593 9.89E-69 dispersed
Cma17g00633 Cma-Chr17:5374354 Cma08g00850 Cma-Chr8:5167220 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35530 PF06203 CCT 9.90E-15 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00850 - - cmo:103500623 563.918