Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00852 ATGCCGTCCGTCTATGGAGATCGGTTGACCACCTTTGAGGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTTGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGATTAGAAGGAGATTCTGCCACAATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCGTAAACCATTGTCAGTGGAGTTAGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCGAAGAGATCAGGAGATGTCTACATTCCTCGTGGTGTTGCTGTCCCTGCACTTGACAAAGACACACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTGACAGGTGGAGACTTGTATGCTACTGTCTTTGAGAATAGTCTAATGGAGCACCATATTGCTCTTCCTCCTGATTCTATGGGGAAAATTACCTATGTTGCACCACCTGGTCAATATTCACTACAGGACACTGTTTTAGAGCTTGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACATGGCCTGTACGTACCCCTAGACCAGTTGCATCTAAGCTTGCGGCCGATACCCCTCTTTTAACTGGGCAGCGTGTTCTTGATGCCCTTTTCCCTTCTGTTCTTGGTGGAACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATACTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTACCTGATGGCCGTGAAGAATCTGTCATGAAGCGTACGACCCTTGTAGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATTACTTTGGCTGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCAACATCCCGATGGGCAGAAGCACTGCGTGAAATATCAGGACGACTGGCTGAAATGCCTGCAGATAGTGGATATCCTGCATACCTAGCAGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTAAAATGCCTTGGTGGGCCAGAACGAACTGGTAGTGTTACCATCGTCGGTGCAGTTTCTCCACCAGGAGGAGATTTCTCTGATCCCGTGACATCTGCTACCCTCAGTATCGTCCAGGTTTTCTGGGGTCTAGATAAAAAGCTTGCCCAGAGGAAGCACTTCCCATCCGTAAACTGGCTAATTTCGTACTCAAAATACTCTACTGCATTGGAATCTTTCTACGAGAAGTTTGATCCAGATTTTATCAGCATCAGGACAAAGGCTCGAGAAGTTCTCCAGAGGGAAGATGACCTCAATGAAATAGTCCAACTTGTAGGGAAGGATGCCTTGGCTGAAGGAGATAAGATTACCCTAGAGACTGCAAAGCTTCTGAGGGAGGACTATCTCGCTCAGAATGCATTTACTCCGTACGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGCAATATCATCCATTTCTATAATTTGGCTAATCAGGCAGTAGAGAGAGGAGCAGGTATGGATGGCCAAAAGATAACATACACTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAGAAGTTCGAGGATCCAGCTGAAGGAGAAGCAGCTCTTATTGAGAAATTTAAGAAGCTACATGAAGATCTTACAAATGGTTTCCGTGCTCTCGAGGATGAAACTCGATGGTACACAATGGTCCATGCCGATGGGTCTGTTTCCCAGACTATGGCTTACTTATACCACAATGGATTGAGGGGATTTATAGATATATGGCCACCGCCCTCTGCTACTGCTTTCAAATTAATTGGATCTTACGCTGCCTTTGAGGCCGCCCTTCAGCTTCTTTTACCTGGAAAAACGGTTTATGGCCCGATCTCCCCTACGGGAAATCAACCTGTTTACAAGGCAAATGGTGTGGCTGCGTACGTAGTGACTCTGGTTACTTATATTGCTCTTTGGCGGTTTGGGATATTCAATCCAACAGTTGTTTATGATCATTTGGGAGAAATATTTTCAACTCTTATTATTGGAAGCTTCATCTTTTGTATTGTTCTATACATAAAAGGCTGTGTGGCGCCATCTTCCTCTGATTCTGGTTCGTCTGGTGACATAATAATTGATTTCTACTGGGGCATGGAGTTGTACCCGCGTATTGGCAAACATTTTGACATTAAGGTTTTCACAAACTGCAGATTTGGGATGATGTCTTGGGCAGTTCTTGCTGTGACCTATTGCATAAACCAGTATGAAAAGAACGGGACAATAGCTGATTCGATGCTTGTAAATACTGCATTGATGTTGGCTTATGTTACAAAGTTTTTTTGGTGGGAAGCTGGGTACTGGAACACAATGGACATAGCGCATGACAGAGCTGGTTTTTATATTTGTTGGGGCTGCTTAGTATGGGTTCCATCTGTATATACCTCTCCTGGCATGTATTTGGTCAACCATCCTGTAAACCTTGGAATTCAGATAGTAGCTTCATACACCACTACATCTGGGGAAACCAAAACTAGCCTTCTTTTAACCTCTGGATGGTGGGGCTTAGCAAGGCATTTTCATTATGTACCAGAAATTTTGGCTGCATTTTTCTGGACAGTTCCAGCCCTTTTCAATCATTTTCTACCATATTTCTATGTGATATTCCTTACTATCCTTCTGGTCGACCGAGCTAAAAGGGATGACAATCGATGTCGGTCCAAGTATGGCAAATATTGGAAACTGTACTGCGAGAAAGTGCCTTACAGAATCATTCCTGGAATATGCTAA 2955 43.62 MPSVYGDRLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDTLWDFQPKKLGEGDLLTGGDLYATVFENSLMEHHIALPPDSMGKITYVAPPGQYSLQDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEKFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEAALIEKFKKLHEDLTNGFRALEDETRWYTMVHADGSVSQTMAYLYHNGLRGFIDIWPPPSATAFKLIGSYAAFEAALQLLLPGKTVYGPISPTGNQPVYKANGVAAYVVTLVTYIALWRFGIFNPTVVYDHLGEIFSTLIIGSFIFCIVLYIKGCVAPSSSDSGSSGDIIIDFYWGMELYPRIGKHFDIKVFTNCRFGMMSWAVLAVTYCINQYEKNGTIADSMLVNTALMLAYVTKFFWWEAGYWNTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVNLGIQIVASYTTTSGETKTSLLLTSGWWGLARHFHYVPEILAAFFWTVPALFNHFLPYFYVIFLTILLVDRAKRDDNRCRSKYGKYWKLYCEKVPYRIIPGIC 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5173893 5187245 - CmaCh08G008520.1 Cma08g00852 299547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00852 984 Gene3D - 20 89 IPR023366 -
Cma08g00852 984 ProSitePatterns Sterol reductase family signature 1. 764 779 IPR018083 GO:0016628
Cma08g00852 984 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Cma08g00852 984 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Cma08g00852 984 ProSitePatterns Sterol reductase family signature 2. 948 971 IPR018083 GO:0016628
Cma08g00852 984 Coils Coil 601 621 - -
Cma08g00852 984 Gene3D - 91 457 IPR027417 -
Cma08g00852 984 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034|GO:0046961
Cma08g00852 984 Gene3D - 459 611 IPR024034 -
Cma08g00852 984 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 - -
Cma08g00852 984 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 611 IPR005725 GO:0033180|GO:0046961|GO:1902600
Cma08g00852 984 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Cma08g00852 984 Pfam Ergosterol biosynthesis ERG4/ERG24 family 645 886 IPR001171 GO:0016020|GO:0016126|GO:0016628
Cma08g00852 984 Pfam Ergosterol biosynthesis ERG4/ERG24 family 899 983 IPR001171 GO:0016020|GO:0016126|GO:0016628
Cma08g00852 984 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Cma08g00852 984 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Cma08g00852 984 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Cma08g00852 984 Gene3D - 134 205 - -
Cma08g00852 984 CDD V_A-ATPase_A 88 460 - -
Cma08g00852 984 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 IPR022878 GO:0046034|GO:0046961
Cma08g00852 984 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Cma08g00852 984 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Cma08g00852 984 Gene3D - 790 983 - -
Cma08g00852 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 462 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00440 Cma-Chr6:2032491 Cma08g00852 Cma-Chr8:5173893 2.45E-29 dispersed
Cma08g00852 Cma-Chr8:5173893 Cma14g00274 Cma-Chr14:1155476 9.13E-31 dispersed
Cma17g00631 Cma-Chr17:5362734 Cma08g00852 Cma-Chr8:5173893 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00852 K02145 - csv:101216234 1218.37