Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00855 ATGTCGTTGAGCACTGACATCGAAAGCCTCTGGGTTTTCGCTTTGGCTTCTAAATGCTCGCCTCTCACCCAACCCAACATCCTTTACTCCTTCCTCTTCCTATGCCTAATTTGGTTTCTTGTTTCCATTTTCCATTGGGCCCATCCTGGCGGCCCTGCTTGGGGCCGCCACCCATGGTGCCGCCGCAATTCCCCTCTCTCCACCACCACTACCACCATCCCTGGCCCAAGGGGCCTCCCCGTCATCGGGAGCATGACCCTCATGACTGGACTGGCCCACCACCGAATAGCCGCCATGGCCGAATCCCTAGGTGCCACACGACTCATGGCCTTCTCACTCGCCAACACTCGCGTGATAGTCACATGTAACCCGGATGTGGCTAAAGAGATCCTCAACAGCTCGGTCTTTGCGGACCGTCCGATTAAGGAATCTGCCTACTCCTTGATGTTCAATCGCGCCGTTGGATTTGCCCCTTATGGTGTCTATTGGCGGACACTCCGACGTATTGCTTCACAACACCTCTTCTGTCCTAAACAAATTAAATCCTCCGAATTCCAACGCCGCCAAATCGCTTCCCAAATGGTCGCAATCTTCGCTGCTAACAACAACAACAACAACAACACCACCTCGTCTCATCACCAAGTTCGTGACACTCTCAAGCGAGCCTCTTTGAACCACATGATGGGCTCCGTCTTCGGCCAGGTTTACAATCTCTCAGACTCCAATAATCAAATCCAGCAACTCAAGAGCCTCGTCGACGAAGGTTACGATTTATTGGGCCTTCTCAACTGGTCCGACCATCTCCCCTTTTTGGCTGATCTCGACCCACAGAGAATCCGGTTCAGATGCTCCCGGTTGGTCCCCAAAGTGAACCGGTTTCTAAACCGGATCATTGCTGATCACCGGTCCAGATCAACCCAACAAATCATGGATTTTGTCGACGTTCTTCTCTCTCTTCAACAAACCGAAAATCTCTCTGATTCCGATATCATCGCCGTTCTTTGGGAAATGATATTTAGAGGGACGGACACGGTGGCTGTGTTGATAGAGTGGACTCTAGCGAGGATGGTGGTCCATAAGGAGGAGCAAGAAAAAGTACAAGAGGAATTAGATAAAGTGGTTGGAAGATCACGCGCCGTCGTGGAATCTGACATTCCGTCGTTGGAATATCTAACGGCGGTGGTTAAGGAAGTTCTGAGGCTACACCCACCGGGGCCTCTTCTATCATGGGCCCGATTAGCCAGAAGTGATACAATGGTGGATGGGCATCACGTGCCGCGTGGGACCACCGCAATGGTTAACATGTGGTCCATAGCACGAGACCCGGAGGTTTGGTGGAGCCCACAGGAGTTTATACCTCAGAGGTTTGTGGGGAATAAGTGGTGTGGGGTGGAGTTTTCGATTATGGGTTCGGATCTAAGGTTGGCTCCATTTGGGTCGGGTCGAAGGAGTTGCCCCGGAAAGGCACTCGCGTGGACTACTGTAACCTTCTGGGTAGCTACTCTATTACACGAGTTTAAATGGTGGCAAAACGACGGCGTTGACTTGTGTGAGAAACTCAAGCTGTCTTGCGAGATGGCGAATCCACTGACGGTTAAAGTATCCCCACGGCGCTAA 1617 51.82 MSLSTDIESLWVFALASKCSPLTQPNILYSFLFLCLIWFLVSIFHWAHPGGPAWGRHPWCRRNSPLSTTTTTIPGPRGLPVIGSMTLMTGLAHHRIAAMAESLGATRLMAFSLANTRVIVTCNPDVAKEILNSSVFADRPIKESAYSLMFNRAVGFAPYGVYWRTLRRIASQHLFCPKQIKSSEFQRRQIASQMVAIFAANNNNNNNTTSSHHQVRDTLKRASLNHMMGSVFGQVYNLSDSNNQIQQLKSLVDEGYDLLGLLNWSDHLPFLADLDPQRIRFRCSRLVPKVNRFLNRIIADHRSRSTQQIMDFVDVLLSLQQTENLSDSDIIAVLWEMIFRGTDTVAVLIEWTLARMVVHKEEQEKVQEELDKVVGRSRAVVESDIPSLEYLTAVVKEVLRLHPPGPLLSWARLARSDTMVDGHHVPRGTTAMVNMWSIARDPEVWWSPQEFIPQRFVGNKWCGVEFSIMGSDLRLAPFGSGRRSCPGKALAWTTVTFWVATLLHEFKWWQNDGVDLCEKLKLSCEMANPLTVKVSPRR 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5210732 5212499 + CmaCh08G008550.1 Cma08g00855 299550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00855 538 SUPERFAMILY Cytochrome P450 73 537 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PANTHER CYTOCHROME P450 78A7-RELATED 3 538 - -
Cma08g00855 538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 478 487 IPR017972 GO:0005506|GO:0016705
Cma08g00855 538 PRINTS E-class P450 group I signature 222 240 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PRINTS E-class P450 group I signature 329 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PRINTS E-class P450 group I signature 349 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PRINTS E-class P450 group I signature 392 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PRINTS E-class P450 group I signature 434 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PRINTS E-class P450 group I signature 475 485 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PRINTS E-class P450 group I signature 485 508 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PRINTS P450 superfamily signature 340 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PRINTS P450 superfamily signature 393 404 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PRINTS P450 superfamily signature 476 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PRINTS P450 superfamily signature 485 496 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 PANTHER CYTOCHROME P450 78A6 3 538 - -
Cma08g00855 538 Pfam Cytochrome P450 74 522 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma08g00855 538 Gene3D Cytochrome P450 66 538 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00855 Cma-Chr8:5210732 Cma13g01064 Cma-Chr13:8065753 1.25E-175 dispersed
Cma01g00029 Cma-Chr1:123363 Cma08g00855 Cma-Chr8:5210732 2.68E-77 wgd
Cma17g00500 Cma-Chr17:3196541 Cma08g00855 Cma-Chr8:5210732 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00855 K20619 - csv:101216159 810.831