Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00869 ATGAGAAACCACCACTTCCTTCTCGTATGCTTCCCTTCCCAAGGACACATAAACCCTTCCCTCCAACTCGCCAAGCGACTCATACACCTTAACATTGAAGTCACCTTCGCCACCACCATCGCCGCCGCCCGCCGCATGAACAACGCCCAACAAACTCCAACAACAAAGGGCTTGTCTTTCGCTACGTTCTCAGACGGCTTCGACGACGACAATCTCAATCTCAGCGCCAACATCACCCACTTCTTCTCTGAACTCAAACGCTGCGGCTCTCAATCTCTCACCAACCTCATCACATCCGCAGCCAACAAAGGCCGCCCCTTCACTTTCCTAATCTACGGCCTCTTACTCAATTGGGCAGCCGATATCGCCACTTCCTTCAACATACCCTCAGCCCTTTTCTTCGCTCAGCCTGCAACCGTCTTAGCTTTGTACTTCCATTACTTCCATGGCTATGAAGAATCCATTTGCAACAAACTCCAAACCCCATCTTCGTGCATAGAATTACCAAACTTACCATTGTTTACAACTCGTGACATGCCATCTTTCTTCTCCCCATGTGGGCCTCATGCGTTTATCATTCCTCCAATGAGAGAGCAACTCGAATTCCTCGGCGGACAAACTCAGCCAAAAGTCTTAGTCAACACATTCGACGCGTTGGAAGCTGATGCCTTGCGAGCCATCGATGAGTTGAAAATAATTGCAATCGGACCCTTGATTCCTTCTAGTCATGATGGTGGCAATCTTTTCCAGGTGTCGAGTGAGGATTATATTGGATGGTTGAATTCCAAGGCTGAGCGCTCGGTTGTTTATGTATCTTTTGGGTCGATTTGTGTGTTGTGTGAGGAACAAGAGAAGGAGCTTTTGCATGGTTTGTTGGAGAGTGGACGGCCATTCTTGTGGGTTGTGAGATCCAATAAGGATGAGGAGAGGTTGAAGAAGGTGGGAATGAAAGGGAAAATTGTGTCGTGGTGCCGTCAAATTGAAGTGTTGAAGCATCCCTCGGTGGGTTGTTTTGTGAGTCATTGTGGGTGGAATTCGACGATTGAAAGCTTGAGTTTTGGGGTGGCAGTGGTTGGGTTTCCGCAGCAGATAGATCAGATGACGAATGCGAAGCTTGTGGAAGATTTGTGGAAGACGGGAGTGAGAGTGAAGGGTAATTCAGAAGGGGTTGTTGAGAGGGGAGAAATTAGGCGATGTTTGGATTTGGTGATGGGGAATGAAGAGATTGAGAGGAATGTGAAAGTGTGGAAGGAATTGGGTAGGCAAGCTATGGAAGAAGGTGGATCGTCAACTTTGAATCTTCAGGCTTTTGTTGCTGAGATTGATGGTGGTAGAGATTGA 1341 47.8 MRNHHFLLVCFPSQGHINPSLQLAKRLIHLNIEVTFATTIAAARRMNNAQQTPTTKGLSFATFSDGFDDDNLNLSANITHFFSELKRCGSQSLTNLITSAANKGRPFTFLIYGLLLNWAADIATSFNIPSALFFAQPATVLALYFHYFHGYEESICNKLQTPSSCIELPNLPLFTTRDMPSFFSPCGPHAFIIPPMREQLEFLGGQTQPKVLVNTFDALEADALRAIDELKIIAIGPLIPSSHDGGNLFQVSSEDYIGWLNSKAERSVVYVSFGSICVLCEEQEKELLHGLLESGRPFLWVVRSNKDEERLKKVGMKGKIVSWCRQIEVLKHPSVGCFVSHCGWNSTIESLSFGVAVVGFPQQIDQMTNAKLVEDLWKTGVRVKGNSEGVVERGEIRRCLDLVMGNEEIERNVKVWKELGRQAMEEGGSSTLNLQAFVAEIDGGRD 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5366642 5367982 - CmaCh08G008690.1 Cma08g00869 299564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00869 446 CDD GT1_Gtf-like 5 433 IPR002213 GO:0008194
Cma08g00869 446 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 4 440 - -
Cma08g00869 446 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 440 - -
Cma08g00869 446 Gene3D Glycogen Phosphorylase B; 244 422 - -
Cma08g00869 446 Gene3D Glycogen Phosphorylase B; 9 434 - -
Cma08g00869 446 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 4 440 - -
Cma08g00869 446 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 258 379 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00869 - - - csv:101213749 605.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00869 Cma-Chr8:5366642 Cma08g00871 Cma-Chr8:5376350 2.41E-151 dispersed
Cma08g00869 Cma-Chr8:5366642 Cma08g00870 Cma-Chr8:5372284 4.64E-134 tandem
Cma17g00474 Cma-Chr17:2889056 Cma08g00869 Cma-Chr8:5366642 7.26E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1056 . . . . . . . . Cmo08g00839 . . . . . . . . . . . . . . . . . . . . . . Cone14ag0540 Cone15ag0563 Cone18ag0904 . . . . . Blo02g00397 . . . . . . . . . . Cma08g00869 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007278 0 2 0 0 0 1 0 1 1 2 1 1 2 2 2 2 1 0 1 1 2 1 1 2 0 2 2 1 2 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00869 Cma_Chr08 FPKM 1.870992 1.500377 1.403833 1.454684 1.644425 1.759791 1.968722 2.468075 2.565467 2.263403