Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00870 ATGGATAACACAGCACCCCACCGCCACCGTATGCTCTTGATAACATACTCTGCTCAAGGACACATCAACCCCGCCCTCGAATTCGCCAAACGCCTCACGCGCCGCCGCATTGATGTCACCTTCGTCACCTCTCTCTCCGCCTATCGCCGCATCGGCAAAACCCCGATGCTGCCTCACGTGTCATTCGCCTCCTTCTCCGATGGCTATGACGACGGTTTCAAACAAGGGGACGACATCAATCATTTCATGTCGGAGCTGGAGCGACGTGGGTCTCAAGCTATTAAGGATATGATTGTGGCGGGTGCGGAACAAGGCCAACCCTTCACTTGCATTGTTTATTCTATACTCCTCCCGTGGGTGGCTACAGTGGCGCGTTCCCTCCACCTTCCGGCGGTCCTTCTTTGGATTCAACCAGCTATTGTTTTTGCTTTGTACTACTATTACAACTATGGTTATCATGACATAATTCAAAGCGTATACGATGATCCTTTGGCAACTATTCAACTACCTGGCCTTCCATTGTTAACGGCTCGTGATCTTCCTTCGTTCTTTGGTTCTTCAGATGCTTATGAATTTGCTCTCCCAATATTTCGGAGGCAATTTGAATTACTCGAGCAAGAGACCAACCCAATGATTGTAATCAACACATTCGACGAATTGGAGCACAACGCACTTAGAGCGATTAGCAATTATATCGACTGGCTGAACTCAAAACCTAAAGGGTCTGTAATTTACGTCTCATCGGGAAGTATATCGACATTATCGAAGCACCAAAACGAGGAGATAGCAAGAGGGTTATTAAGCTGTGGACGACCATTTTTGTGGGTGATTCGAGACATTGAAGAAGTAAATACGTTGAGTTGTAGGGAGGAATTGGAAGGTTTAGGAAAGATAGTGTCATGGTGTTCACAAATAGAGGTTCTATCAAGGCCAGCGACAGGATGTTTTCTAACACATTGTGGATGGAATTCGACGTTGGAGAGTTTGGTTTGCGGGGTACCTGTGGTGGTGTTTCCACAGTGGTCGGATCAGGGGACGAATGCGAAGATCATTCAAGACATGTCGGAGACGGGAGTGAGGTTGGAGGTGGGGATGGATGGCGTGGTTAAGCGGGAGGAGATAAAGAGATGCTTGGAGTTGGTGATGGGAGATTCAAAGAAAGGAGAAGAGATAAGGAGGAATGTGGTGAAATGGAAGGAGTTGGCTAAGGGAGCCACTGCCCACGGCGGTTCTTCATATTCAAACTTCAAGGCTTTTGTGGACCAAGTTTGTCCTTAA 1278 47.57 MDNTAPHRHRMLLITYSAQGHINPALEFAKRLTRRRIDVTFVTSLSAYRRIGKTPMLPHVSFASFSDGYDDGFKQGDDINHFMSELERRGSQAIKDMIVAGAEQGQPFTCIVYSILLPWVATVARSLHLPAVLLWIQPAIVFALYYYYNYGYHDIIQSVYDDPLATIQLPGLPLLTARDLPSFFGSSDAYEFALPIFRRQFELLEQETNPMIVINTFDELEHNALRAISNYIDWLNSKPKGSVIYVSSGSISTLSKHQNEEIARGLLSCGRPFLWVIRDIEEVNTLSCREELEGLGKIVSWCSQIEVLSRPATGCFLTHCGWNSTLESLVCGVPVVVFPQWSDQGTNAKIIQDMSETGVRLEVGMDGVVKREEIKRCLELVMGDSKKGEEIRRNVVKWKELAKGATAHGGSSYSNFKAFVDQVCP 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5372284 5374051 + CmaCh08G008700.1 Cma08g00870 299565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00870 425 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 230 422 - -
Cma08g00870 425 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 9 229 - -
Cma08g00870 425 Gene3D Glycogen Phosphorylase B; 229 404 - -
Cma08g00870 425 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 10 424 - -
Cma08g00870 425 CDD GT1_Gtf-like 10 408 IPR002213 GO:0008194
Cma08g00870 425 ProSitePatterns UDP-glycosyltransferases signature. 301 344 IPR035595 -
Cma08g00870 425 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 9 229 - -
Cma08g00870 425 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 230 422 - -
Cma08g00870 425 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 234 386 IPR002213 GO:0008194
Cma08g00870 425 Gene3D Glycogen Phosphorylase B; 14 228 - -
Cma08g00870 425 Gene3D Glycogen Phosphorylase B; 405 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00870 - - - csv:101203309 580.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00870 Cma-Chr8:5372284 Cma08g00876 Cma-Chr8:5416209 1.98E-159 dispersed
Cma08g00869 Cma-Chr8:5366642 Cma08g00870 Cma-Chr8:5372284 4.64E-134 tandem
Cma08g00870 Cma-Chr8:5372284 Cma08g00871 Cma-Chr8:5376350 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1057 . . . . . . . . Cmo08g00840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00859 . . . . . . . . . . . Cma08g00870 . . . . . Bhi12g02118 . . . . . Lcy13g0890 . . . . . . . Lsi09g01617 . . Cme11g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00870 Cma_Chr08 FPKM 8.26718 8.773282 6.970807 5.642841 38.677784 42.395321 41.302498 0.281042 0.461888 0.20094