Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00871 ATGGATAACACCGGTGCCAAGCGCCGCCGCGTGCTATTGATATCCTTCCCTGCTCAAGGCCACATCAACCCTTCCCTCCAGTTCGCCAAGCGCCTCACGCGCCACCTCGTCCATGTCACTTTTGTCACCTCCCTCTCCGTTTACCGCCGCATGTCCCAAACCCCAACGCTCCCTCATATCTCCTTCGCCTCCTTCTCCGACGGCTACGACGACGGATTCAAACTAGCAAACGACGACCCCATTCGCTTCAAGTCGGAGATGGAGCGCCTCGGATCCCAAGCGATAAGGGATATGATTACAACAAACGCGGAGGAAGGCCAGCCCTTCACTTGCGTCGTATATTCCATACTCTTACCATGGGTGGCTGTGGTGGCGCGTTCCCTCCACCTCCCTTCAATTCTTCTCTGGGTTCAACCCGCCACCGTTTTTACTCTGAACTACCATTACTTCAATGGCTACAAAGACTCCATAATCCAGAGCATTCTCGATGACCCTTCAAGAACAATTCAATTACCTGGACTTCCATTATTAACTGCCCATGACGTTCCATCGTTTCTCCTTCCTTCCAATGTTTATGAGTTTGCCTTCCCCATATTTCAAAAGCTATTTGAATTACTGGCTCAACAGACCAATCCCAAGGTTCTAGTCAACACGTTCCAGGCCTTGGAGCAGGACGTGGTGCGAGGGATGGACAAGATCCATTTGGTGCCCATTGGACCCTTGGTTCCGTCGGCTTTTCTGGACTGTGAGGACCCTTCAGATGCCTCTTTTTGCGGCGATATGTTTCCATGTAGTCGTAACAACGATGATTACATTACTTGGCTTAACTCCAACTCCAAAGCAGCTGTGGTTTATGTATCGTTTGGAAGCATTGCGATGCTGTCCAAGGAACAGAAAGAGGAGATTGCAAGTGGGCTGTTGAGCTTTGGACAACCGTTTCTTTGGGTGATTAGAGATGAAGATATGGGAGATCATACATTGAGTTGCAGGGAGGAACTAGAAGCGGTAGGAAAAATAGTTACATGGTGTTCACAACTAGAGGTTCTGTCAAGCCCAGCCACAGGATGTTTTGTAACGCACTGCGGATGGAATTCGACGTTGGAGAGTTTGGTTTGCGGGGTTCCGGTGGTGGGGTTTCCGCAGTGGGCGGATCAAGGAACCAATGCAAAGATCATTGAAGACATGTCGGAGACGGGAGTGAGGGTGGAGGTGGGCATGGATGGCATGGTTAAGCGAGAAGAGATAAAAAGGTGCTTGGAGGTGGTGATGGGAGATTCAAACAAAGGGGAAGAGATAAGGAAGAAGGCCCTGAAATGGAAGGAGTTGGCCAAGGAAGCTGCTAGGGATGGTGGCTCATCACATGCCAACTTCAAGGCTTTTGTGGACCAACTTTGTTCTTAA 1401 49.96 MDNTGAKRRRVLLISFPAQGHINPSLQFAKRLTRHLVHVTFVTSLSVYRRMSQTPTLPHISFASFSDGYDDGFKLANDDPIRFKSEMERLGSQAIRDMITTNAEEGQPFTCVVYSILLPWVAVVARSLHLPSILLWVQPATVFTLNYHYFNGYKDSIIQSILDDPSRTIQLPGLPLLTAHDVPSFLLPSNVYEFAFPIFQKLFELLAQQTNPKVLVNTFQALEQDVVRGMDKIHLVPIGPLVPSAFLDCEDPSDASFCGDMFPCSRNNDDYITWLNSNSKAAVVYVSFGSIAMLSKEQKEEIASGLLSFGQPFLWVIRDEDMGDHTLSCREELEAVGKIVTWCSQLEVLSSPATGCFVTHCGWNSTLESLVCGVPVVGFPQWADQGTNAKIIEDMSETGVRVEVGMDGMVKREEIKRCLEVVMGDSNKGEEIRKKALKWKELAKEAARDGGSSHANFKAFVDQLCS 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5376350 5378721 - CmaCh08G008710.1 Cma08g00871 299566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00871 466 ProSitePatterns UDP-glycosyltransferases signature. 342 385 IPR035595 -
Cma08g00871 466 CDD GT1_Gtf-like 10 456 IPR002213 GO:0008194
Cma08g00871 466 Gene3D Glycogen Phosphorylase B; 256 445 - -
Cma08g00871 466 Gene3D Glycogen Phosphorylase B; 14 457 - -
Cma08g00871 466 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 9 463 - -
Cma08g00871 466 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 465 - -
Cma08g00871 466 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 270 428 IPR002213 GO:0008194
Cma08g00871 466 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 9 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00871 - - - bhj:120067925 647.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00869 Cma-Chr8:5366642 Cma08g00871 Cma-Chr8:5376350 2.41E-151 dispersed
Cma08g00871 Cma-Chr8:5376350 Cma17g00474 Cma-Chr17:2889056 6.26E-130 dispersed
Cma19g00287 Cma-Chr19:2167184 Cma08g00871 Cma-Chr8:5376350 3.67E-76 dispersed
Cma08g00871 Cma-Chr8:5376350 Cma08g00876 Cma-Chr8:5416209 2.32E-158 proximal
Cma08g00870 Cma-Chr8:5372284 Cma08g00871 Cma-Chr8:5376350 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1058 . . . . . . . . Cmo08g00841 . . . . . . Cpe08g00103 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma08g00871 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00871 Cma_Chr08 FPKM 0.262733 0.279636 3.912689 5.313426 2.838959 3.102287 3.804531 0.0 0.0 0.0