Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00873 ATGGGTTCCCTCAACCCCCTCCTTTCTCTCTCCACTCTCCTCCTCCTCCTCCTCCTCCTCTTTCTCTCCCCCGCCGCCGGCGATGATGCCGCTATCATCCAGAAGCTCGCCGCCGCAATCTCTCCGACCCCATCCGGCTGGTCCACCAACACCCCGTTCTGCGACTGGAAAGAAATCCGCTGCGACGCCTCCGACCGAGTTACCTCCATTAACTTAGCCTCCAAATCCCTCTCCGGCGTCCTCCCTTCCGATCTCAACTCCCTCTCTCAGCTCACTTCTCTCTCTCTTCAACGCAACTCCTTCACCGGCTCCATTCCTTCCTTTGCCAATCTCTCTTTTCTCCAATCTCTCTATCTCGACAACAACAATTTCTCCTCTGTTCCTCCCGCCGCCTTCCAAGGCCTCACGAGCTTGCAGATTCTGAGCCTATCCCAGAATCTTAATCTTGCCCCTTGGTCCATTCCCACTGATTTGACTCAGGCTTCTAATTTGGTTAGTTTTTACGCTGCAAATGCCAACATCGTTGGCTCCTTGCCCGATTTCTTCGATTCGTTTTCTACTTTGCAGGAGCTTCGTCTTTCTTACAACAATCTTACTGGGGTTTTGCCCAAATCTCTCGGTGGATCTGGGATTAAGAGCTTGTGGATGAACAATCAGGTAATGGGGTTGTCCGGTTCTATTGATTTGTTGTCGTCTATGACTCAATTGACTCAGGTTTGGCTTCATAAGAACCAATTTACTGGCCAAATTCCAGACCTCTCCAAATGTGAGGGTTTATTTGATCTTCAACTTCGTGATAATCAATTTACTGGGATTGTTCCTCTGTCGCTTATGCACCTTCCTAGCTTGTTGAATGTTAGTTTAGATAACAATAAGCTTCAAGGGCCATTGCCTGTGTTTGATTCAAGAGTACAGGCGAGTTTTAGTAGTGTGAATAGGTTCTGTAAGACAACACCTGGGCAATGCGATGCTCAGGTTTCTGTGCTTCTTGAGGTCGCTGGGGCTTTCGGGTACCCTATTTCGCTGGCATCCGCATGGGAAGGAGATGATGCTTGCCAGAATTGGAGATTTGTGGTTTGTACTGATGGGAAGGTTACTACAATTAACATTGGGAAGCAACTTTTTGTGGGGATGATCTCTCCTGCATTTGCCAATTTGACGAGCTTGAAGAATTTGTATTTGAATGACAATAACTTAACCGGCGAGATACCGGCGAGTTTGACGACGTTGGCACAGCTTCAGACACTCGACGTTTCGAACAACAATTTGAGCGGACAAATTCCCAAGTTTGCTGCATCAGTCAAGTTGAACACGAAGGGTAATCCCCTGATTGGAACAGGTTTGACCCCTGGAGGACATGATGGTGGGAAGATTGATTCCAATGGCACAACCATAGATAACCCTTCTTCTGGATCTTCCAATGGATCCTCTGTTTCAGCTGGTGTGATTGTCGGTGTTGTCATCGCTGGTCTTGTTTTTATTGCTGTCTTATTGTTTGTTGTCTTCAAATGTTATGTAAGCAATAGGCATAAGATGTTTGAGAAAGTGAACAATCCTGAGAATGGGAAGGAGATTGTCAAGAGTGATGCATGGAGTGGCTTGAATGGTTATGCTGGAGTTCCAAGTGAGCTGCAAAGTCAGAGTAGTGAGGATTTCAGCAACAACATCCATTCGTTCGACGGCGGGAACGTGGCGATATCGATACATCTTCTAAGGCAAGTGACGAACAATTTTAGTGAGGATAACGTGCTGGGTAGAGGAGGATTCGGAGTCGTTTACAAAGGAGAGTTGCATGATGGTACCATAATTGCTGTGAAAAGAATGGAGTCTGGTGCAATGGGTACTAAAGGAATGAATGAGTTTCAAGCTGAAATTGGTGTGCTTACTAAAGTAAGACATAGACATTTGGTTGGTCTGTTGGGTTATTGCATTAATGGCAATGAGAGGCTGTTGGTGTATGAGTTCATGCCGGAAGGGACATTGACACAACATTTATTTGATTGGGAAGAGAATGGCTATGCGCCACTTACTTGGAAACAAAGAATTACAATTGCTTTAGATGTGGCAAGAGGAGTTGAATATCTCCATAGCTTAGCTCAACAAAGCTTCATTCATAGAGATTTAAAGCCTTCTAATATTCTTCTTGGCCATGACATGAGAGCTAAGGTTGCTGATTTTGGTTTGGTTAGGAATGCACCGGACGGGAAGTACTCCGTCGAGACACGTTTAGCTGGAACGTTCGGTTATCTTGCTCCTGAATATGCAGCGACGGGAAGAGTAACGACGAAAGTGGATGTGTATGCATTTGGAGTAGTATTGATGGAGATCATCAGCGGTCGAAAAGCGTTGGACGACACGATGCCGGACGAGCAATCTCATTTGGTGACATGGTTACGTAGAGTGTTGATCAACAAAGAAAACATCCCAAAGGCGATTGATCAAACGCTGAACCCTGATGAGGAGACAATGGAGAGTATATACAAAGTGTTGGAGCTGGCAGGACACTGCACAGCTCGTGAGCCTCACCAAAGACCCGACATGGGCCACGCCGTCAACATCCTTGGCCCTCTCGTGGACCAATGGAGGCCTACGAGTCATCACGAGGAAGAAACAGAGGGGATGGATGCGGGCATGAACATGAGCCTTCCCCAAGCTCTTCAAAGATGGCAAGCCAATCAAGGAACATCAACCATGTTCAATGACCTTTCTTACTCACAGACCCATTCTAGCATTCCTTCCAAACCTTCGGGATTTGCAGACACCTTTGACTCCATGGATGCCAGATGA 2787 46.61 MGSLNPLLSLSTLLLLLLLLFLSPAAGDDAAIIQKLAAAISPTPSGWSTNTPFCDWKEIRCDASDRVTSINLASKSLSGVLPSDLNSLSQLTSLSLQRNSFTGSIPSFANLSFLQSLYLDNNNFSSVPPAAFQGLTSLQILSLSQNLNLAPWSIPTDLTQASNLVSFYAANANIVGSLPDFFDSFSTLQELRLSYNNLTGVLPKSLGGSGIKSLWMNNQVMGLSGSIDLLSSMTQLTQVWLHKNQFTGQIPDLSKCEGLFDLQLRDNQFTGIVPLSLMHLPSLLNVSLDNNKLQGPLPVFDSRVQASFSSVNRFCKTTPGQCDAQVSVLLEVAGAFGYPISLASAWEGDDACQNWRFVVCTDGKVTTINIGKQLFVGMISPAFANLTSLKNLYLNDNNLTGEIPASLTTLAQLQTLDVSNNNLSGQIPKFAASVKLNTKGNPLIGTGLTPGGHDGGKIDSNGTTIDNPSSGSSNGSSVSAGVIVGVVIAGLVFIAVLLFVVFKCYVSNRHKMFEKVNNPENGKEIVKSDAWSGLNGYAGVPSELQSQSSEDFSNNIHSFDGGNVAISIHLLRQVTNNFSEDNVLGRGGFGVVYKGELHDGTIIAVKRMESGAMGTKGMNEFQAEIGVLTKVRHRHLVGLLGYCINGNERLLVYEFMPEGTLTQHLFDWEENGYAPLTWKQRITIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGHDMRAKVADFGLVRNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEIISGRKALDDTMPDEQSHLVTWLRRVLINKENIPKAIDQTLNPDEETMESIYKVLELAGHCTAREPHQRPDMGHAVNILGPLVDQWRPTSHHEEETEGMDAGMNMSLPQALQRWQANQGTSTMFNDLSYSQTHSSIPSKPSGFADTFDSMDAR 928
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5399682 5403331 + CmaCh08G008730.1 Cma08g00873 299568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00873 928 SMART serkin_6 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00873 928 MobiDBLite consensus disorder prediction 460 475 - -
Cma08g00873 928 Gene3D Transferase(Phosphotransferase) domain 1 656 879 - -
Cma08g00873 928 CDD STKc_IRAK 584 857 - -
Cma08g00873 928 MobiDBLite consensus disorder prediction 905 928 - -
Cma08g00873 928 Gene3D Ribonuclease Inhibitor 323 447 IPR032675 -
Cma08g00873 928 SUPERFAMILY L domain-like 49 436 - -
Cma08g00873 928 Gene3D Ribonuclease Inhibitor 27 322 IPR032675 -
Cma08g00873 928 Pfam Protein tyrosine and serine/threonine kinase 581 852 IPR001245 GO:0004672|GO:0006468
Cma08g00873 928 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Cma08g00873 928 Pfam Leucine rich repeat N-terminal domain 323 360 IPR013210 -
Cma08g00873 928 MobiDBLite consensus disorder prediction 446 475 - -
Cma08g00873 928 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Cma08g00873 928 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 13 928 - -
Cma08g00873 928 ProSiteProfiles Protein kinase domain profile. 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00873 928 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Cma08g00873 928 SUPERFAMILY Protein kinase-like (PK-like) 562 854 IPR011009 -
Cma08g00873 928 SMART LRR_typ_2 185 208 IPR003591 -
Cma08g00873 928 SMART LRR_typ_2 111 134 IPR003591 -
Cma08g00873 928 SMART LRR_typ_2 386 410 IPR003591 -
Cma08g00873 928 SMART LRR_typ_2 135 161 IPR003591 -
Cma08g00873 928 SMART LRR_typ_2 88 110 IPR003591 -
Cma08g00873 928 Gene3D Phosphorylase Kinase; domain 1 539 655 - -
Cma08g00873 928 Pfam Leucine rich repeat 365 423 IPR001611 GO:0005515
Cma08g00873 928 Pfam Leucine rich repeat 114 147 IPR001611 GO:0005515
Cma08g00873 928 PANTHER OSJNBA0070M12.3 PROTEIN 13 928 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00873 - - - cmax:111494261 1731.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00873 Cma-Chr8:5399682 Cma15g00754 Cma-Chr15:3685923 0 dispersed
Cma17g00472 Cma-Chr17:2873337 Cma08g00873 Cma-Chr8:5399682 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1059 . Blo12g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0538 Cone15ag0562 Cone18ag0903 . . . . . . Blo07g00197 . . . . . Bma06g01485 . . . Cma08g00873 . . . . . Bhi12g02115 . . . . . Lcy13g0883 . . . . . . . Lsi09g01615 . . Cme11g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004008 3 1 2 2 2 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 0 0 0 2 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68763 PF07714 PK_Tyr_Ser-Thr 7.90E-48 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00873 Cma_Chr08 FPKM 7.916643 9.465562 4.016555 3.907012 5.941657 6.142959 5.991258 6.073589 5.852452 6.054457