Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00875 ATGGAGAAGAAACTGTTCAGAAACACTTGCTCCACCGAGCTCTGGTTCGCCATTTTCATTTCCTTCGCCATAACATGGATTTTCCTCTGTTTTGATTACTCCCCTTTCCATTCCTCCAACAATGGCGTCCTCGCTTCCTCCTTAAACCCTAATAGACTACTCGTCAAACCCTCTGCTGCTGCTCGGAGCGTCGACTTGGAATCTGACACCGCCGATCCTTGCTCTGGTCGCTACTTGTTCATCCAGGACATTCCGAGTCGTTTCAATTCTGATTTGATTAGAAATTGCCAATCTCTTACCAGAGGAACCGACAAATCCGATATGTGTCCGTATTTGGTGAACTCTGGCCTAGGGCCTGAAATTGAAGATTCTCAAGGGGTTTTCTTCAATAATAGTTGGTTCAAGACGAATCAATTTCTGTTGGAGGTCATTTTCCACAACAAGATGAAACAGTACAAGTGCTTGACGAACGATTCGGCTATGGCGTCCGCCGTTTATGTACCGTTCTACGCTGGTCTTGACATCAGCCATTATCTTTGGAATCCGAGCATCTCGGTTAGGGATTCCTCAGCTAGAGATTTTTTGAGTGTGATTTCTGAAAAACCTGAGTGGAAGAGGATGTTTGGGAGGGATCATTTCTTCATTGCCGGAAGAATTTCTTGGGATTTCAGAAGAAAAACGGATGATGTTTCTGATTGGGGAAGTAAACTCAGATTCTTGCCTGAGTCTCACAATATGACGATGCTCTCTGTTGAAGCAAGTTCGTGGAAGAACGATTTTGCGATTCCGTATCCGACTTATTTTCATCCATTGAAACTGAGTGAAGTTGTTGAATGGAAGAGTCTCATGAGGACCAAACGGCGCCGTCATTTGTTCACCTTCGCCGGCGCTCCACGGCCGGAACTCAGAGACTCCATTCGCGGTATGGTAATTGAACAATGTCGAGGTTCTTCTCTCTGTAAATTCATAGATTGCAGTTCCGATGGGGTTAATTGTGATGATCCTGTTACCACCATGAAAGAGTTTCAGAGCTCTATCTTCTGCTTGCAACCTGTCGGAGATTCATACACCAGAAGATCAACATTCGATTCGATTTTAGCTGGATGTATTCCTGTTTTCTTTCATCCAGGTTCTGCATATTCCCAATATTTGTGGCATTTTCCTGAGAACCGAACAGCTTATTCTGTGTATATACCTGTGAGGGATGTGAAAAATTGGAACGAGAGCATTGAGGGGATATTGAATGGGATTCCCAAGGACAGGGAATCCGCCATGAGAGAGGAGGTTATAAGAATTATTCCAAGGATTGTTTATGCAGATCCCAGATCGAAATTTATGGATTTTGAAGATGCATTTGATTTAGCTGTAAAAGGGATTCTTGAAAGAGTTGAAGATGTTAGAAGGAAGATCAGGGATGGGAAAGATCCTAGTGAAGGATTTGATGATCCTGATCATTTTAAGTACACATTTTCCAGAAAAATCTGA 1485 43.16 MEKKLFRNTCSTELWFAIFISFAITWIFLCFDYSPFHSSNNGVLASSLNPNRLLVKPSAAARSVDLESDTADPCSGRYLFIQDIPSRFNSDLIRNCQSLTRGTDKSDMCPYLVNSGLGPEIEDSQGVFFNNSWFKTNQFLLEVIFHNKMKQYKCLTNDSAMASAVYVPFYAGLDISHYLWNPSISVRDSSARDFLSVISEKPEWKRMFGRDHFFIAGRISWDFRRKTDDVSDWGSKLRFLPESHNMTMLSVEASSWKNDFAIPYPTYFHPLKLSEVVEWKSLMRTKRRRHLFTFAGAPRPELRDSIRGMVIEQCRGSSLCKFIDCSSDGVNCDDPVTTMKEFQSSIFCLQPVGDSYTRRSTFDSILAGCIPVFFHPGSAYSQYLWHFPENRTAYSVYIPVRDVKNWNESIEGILNGIPKDRESAMREEVIRIIPRIVYADPRSKFMDFEDAFDLAVKGILERVEDVRRKIRDGKDPSEGFDDPDHFKYTFSRKI 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5408839 5410323 - CmaCh08G008750.1 Cma08g00875 299570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00875 494 PANTHER XYLOGLUCAN GALACTOSYLTRANSFERASE GT14-RELATED 9 478 - -
Cma08g00875 494 Pfam Exostosin family 74 411 IPR040911 -
Cma08g00875 494 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 9 478 IPR004263 GO:0006486|GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00875 - - - bhj:120068416 874.004
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00875 Cma-Chr8:5408839 Cma17g00468 Cma-Chr17:2832753 0 dispersed
Cma06g00766 Cma-Chr6:3888515 Cma08g00875 Cma-Chr8:5408839 4.19E-88 transposed
Cma17g00467 Cma-Chr17:2823551 Cma08g00875 Cma-Chr8:5408839 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1075 . Blo12g00162 . . . . . . Cmo08g00846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed09g0011 . . Cma08g00875 . . . . . Bhi12g02112 Tan06g1947 Cmetu06g2696 Lac12g1529 Hepe03g0625 . Lcy13g0847 . . . . . . . Lsi09g01610 . . Cme11g02209
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003717 3 1 2 2 2 1 4 1 1 1 1 1 3 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00875 Cma_Chr08 FPKM 2.017509 2.649843 4.39509 4.011234 8.686696 7.239729 9.538848 3.189914 3.263937 4.085346