Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00890 ATGGAGTCCGGTTCTTTTGATCAGAACATCAGGGGAGTGCCCACCCATGGCGGTCGATACATTCAATACAATTTGTATGGGAATCTCTTTGAAGTTTCTAGGAAGTATATTCCACCCATAAAGCCTGTTGGTAGAGGAGCTTATGGTATTGTCTGTGCTGCTACTAATTCAGAAACAAATGAGGAGGTTGCTATTAAGAAGGTTGGCAATGCATTTGACAATAGGATTGATGCTAAAAGAACCTTGCGGGAAATCAAGCTTCTTCGTCACATGGATCATGAAAATATTATTGCTCTTAAAGATATTATAAGACCTCCTCAGAAGGAGAATTTCAACGATGTGTACCTTGTTTATGAACTGATGGATACTGATCTAAATCAGATAATACGGTCCAACCAATTGTTGACTGATGACCATTGTCGGTTCTTTCTGTACCAGTTGTTACGAGGCCTAAAATACGTACATTCCGCTAATGTTCTACATCGTGATCTGAAACCAAGCAATTTGTTCCTCAATGCAAATTGTGACCTAAAACTTGGGGACTTTGGGCTTGCAAGGACAACTTCTGAGACTGATTTTATGACTGAGTACGTTGTTACTCGGTGGTACCGTGCACCGGAATTGCTTCTTAATTGTTCGGAATACACTGGAGCAATAGATATTTGGTCTGTTGGCTGTATACTTGGTGAAATTATGCACAGAAAACCACTGTTTCCTGGAAAAGATTATGTCCATCAGCTAAAACTTATTACTGAGCTCATTGGGTCACCTGACGACTCGAGCCTCGGGTTCTTACGAAGTGACAATCCACAAAAATATTTTAAAAATATTCCTCACTTCCCGAGGCAACCGTTCTCCACTAAATTTCCTACAATGTCTCCTGCTGCTATCGACTTGCTGGAGAAGATGCTCGTCTTTGATCCTACTAAACGCATTACAGTTGATGAGGCGTTGAGCCATCCATACTTGGCACCTCTTCACGATATCAATGAGGAGCCAGTATGTCCGAGGCTTTTCAGTTTTGATTTCGAGCAACCGTCATTTACCGAAGAAAACATCAAGGAACTTGTATGGAGAGAATCCGTGAAGTTCAACCCGGATCCCGCTTGA 1110 41.71 MESGSFDQNIRGVPTHGGRYIQYNLYGNLFEVSRKYIPPIKPVGRGAYGIVCAATNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENIIALKDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQLLTDDHCRFFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKLGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRKPLFPGKDYVHQLKLITELIGSPDDSSLGFLRSDNPQKYFKNIPHFPRQPFSTKFPTMSPAAIDLLEKMLVFDPTKRITVDEALSHPYLAPLHDINEEPVCPRLFSFDFEQPSFTEENIKELVWRESVKFNPDPA 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5512522 5517697 + CmaCh08G008900.1 Cma08g00890 299585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00890 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 368 - -
Cma08g00890 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cma08g00890 369 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma08g00890 369 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00890 369 CDD STKc_TEY_MAPK 30 366 - -
Cma08g00890 369 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Cma08g00890 369 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Cma08g00890 369 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00890 369 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Cma08g00890 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 14 368 - -
Cma08g00890 369 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma08g00890 369 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01429 Cma-Chr2:8238896 Cma08g00890 Cma-Chr8:5512522 0 dispersed
Cma05g00263 Cma-Chr5:1112475 Cma08g00890 Cma-Chr8:5512522 1.30E-152 dispersed
Cma08g00890 Cma-Chr8:5512522 Cma15g01248 Cma-Chr15:7927658 0 dispersed
Cma17g00451 Cma-Chr17:2685984 Cma08g00890 Cma-Chr8:5512522 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68764 PF00069 Pkinase 9.20E-72 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00890 K20600 - csv:101215189 709.523