Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00893 | ATGTACGCTGACGACGACATCGTAAGTCGAGACCATAACACACCAAGAAGCAAAAGAACCCCCTTCTGCAAAATCAACAGAAACCCATTTGTAAATTTGTCCATTTTCCGACCCGACCAGATGGGTTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACAATATTCCTCCATTTACTCTCTCTCCTCGACTTACTCAAACGCCTAATTCTGTACCTGTTCCGCCTCCTCGGCCTCCCGGAATTTCTCCACTCCGACGCCGCCGTCTCGCCGGAGGTTGGGTTTCCCTTGAACCCACCAGCCTCCGCCGTGCTCCTCCGCGAATTCCTCCCCGTAGTGAAATTCTCGGATGTCCCCCAGGCGGCGGCAGAGAGCTGCGCCGTATGCCTATACGAGTTCGAGGGAGCAGAGGAGATCCGGTGGCTGACCAACTGCAAGCACATATTCCATAGAGGGTGTGTGGACCGTTGGATGGATCATGATCAGAAGACATGTCCGCTTTGTAGAACGCCGTTCGTGCCTGACGGGATGATGGATGAGTTCAATCAACGGCTCTGGGCCGCCTCTGGAATTGCTGAGTTTGATTCTGAGTTCAACTCGGTTTTAGGTTAG | 612 | 53.43 | MYADDDIVSRDHNTPRSKRTPFCKINRNPFVNLSIFRPDQMGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSPEVGFPLNPPASAVLLREFLPVVKFSDVPQAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG | 203 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5541260 | 5545256 | + | CmaCh08G008930.1 | Cma08g00893 | 299588 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00893 | 203 | PANTHER | BRH1 RING FINGER PROTEIN | 41 | 197 | - | - | |
Cma08g00893 | 203 | SUPERFAMILY | RING/U-box | 110 | 175 | - | - | |
Cma08g00893 | 203 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 175 | IPR013083 | - | |
Cma08g00893 | 203 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 41 | 197 | - | - | |
Cma08g00893 | 203 | Pfam | Ring finger domain | 125 | 169 | IPR001841 | - | |
Cma08g00893 | 203 | CDD | RING-H2 | 126 | 169 | - | - | |
Cma08g00893 | 203 | ProSiteProfiles | Zinc finger RING-type profile. | 126 | 169 | IPR001841 | - | |
Cma08g00893 | 203 | SMART | ring_2 | 126 | 168 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00893 | Cma-Chr8:5541260 | Cma14g02051 | Cma-Chr14:14282495 | 2.96E-43 | dispersed | |
Cma02g01434 | Cma-Chr2:8262304 | Cma08g00893 | Cma-Chr8:5541260 | 5.82E-40 | transposed | |
Cma17g00450 | Cma-Chr17:2675880 | Cma08g00893 | Cma-Chr8:5541260 | 2.36E-63 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00893 | K16281 | - | csv:101220424 | 251.136 |