Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00893 ATGTACGCTGACGACGACATCGTAAGTCGAGACCATAACACACCAAGAAGCAAAAGAACCCCCTTCTGCAAAATCAACAGAAACCCATTTGTAAATTTGTCCATTTTCCGACCCGACCAGATGGGTTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACAATATTCCTCCATTTACTCTCTCTCCTCGACTTACTCAAACGCCTAATTCTGTACCTGTTCCGCCTCCTCGGCCTCCCGGAATTTCTCCACTCCGACGCCGCCGTCTCGCCGGAGGTTGGGTTTCCCTTGAACCCACCAGCCTCCGCCGTGCTCCTCCGCGAATTCCTCCCCGTAGTGAAATTCTCGGATGTCCCCCAGGCGGCGGCAGAGAGCTGCGCCGTATGCCTATACGAGTTCGAGGGAGCAGAGGAGATCCGGTGGCTGACCAACTGCAAGCACATATTCCATAGAGGGTGTGTGGACCGTTGGATGGATCATGATCAGAAGACATGTCCGCTTTGTAGAACGCCGTTCGTGCCTGACGGGATGATGGATGAGTTCAATCAACGGCTCTGGGCCGCCTCTGGAATTGCTGAGTTTGATTCTGAGTTCAACTCGGTTTTAGGTTAG 612 53.43 MYADDDIVSRDHNTPRSKRTPFCKINRNPFVNLSIFRPDQMGFPVGCTEVFFPTIFLHLLSLLDLLKRLILYLFRLLGLPEFLHSDAAVSPEVGFPLNPPASAVLLREFLPVVKFSDVPQAAAESCAVCLYEFEGAEEIRWLTNCKHIFHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGIAEFDSEFNSVLG 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5541260 5545256 + CmaCh08G008930.1 Cma08g00893 299588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00893 203 PANTHER BRH1 RING FINGER PROTEIN 41 197 - -
Cma08g00893 203 SUPERFAMILY RING/U-box 110 175 - -
Cma08g00893 203 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 175 IPR013083 -
Cma08g00893 203 PANTHER RING ZINC FINGER PROTEIN-RELATED 41 197 - -
Cma08g00893 203 Pfam Ring finger domain 125 169 IPR001841 -
Cma08g00893 203 CDD RING-H2 126 169 - -
Cma08g00893 203 ProSiteProfiles Zinc finger RING-type profile. 126 169 IPR001841 -
Cma08g00893 203 SMART ring_2 126 168 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00893 Cma-Chr8:5541260 Cma14g02051 Cma-Chr14:14282495 2.96E-43 dispersed
Cma02g01434 Cma-Chr2:8262304 Cma08g00893 Cma-Chr8:5541260 5.82E-40 transposed
Cma17g00450 Cma-Chr17:2675880 Cma08g00893 Cma-Chr8:5541260 2.36E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00893 K16281 - csv:101220424 251.136