Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00896 ATGTCTTCTCTTCTCCTCTTCCTTCTACTTGTCTTCACTCTCCCGTTGGTCTCCCTTGCGGTCTCGAAAGCTGAAGTTTCGTATCTCATTAATCGGCAACTTTTGGCTCTAAGAGAACACGAAGAACTCCCAGATGACTACAAATATGAAGTTGAAGTTAATTCTCATGAAACTTTCATAAATGAGAGGTTGAAGAAGGCTTTTGTTGCCCTCAAAGCTTGGAAAGCCGCCATATATTCGGACCCATATAACTTCACTGAAAATTGGGTTGGCAATGATGTCTGTCTTTATAGGGGCGTTTTTTGTACTTCGGCCCTTGATGACTCCACTGTTGAGGTTGTGGCTGGCATTGATTTGAACCATGCTGATATTGCAGGCTACTTGCCACCCGAGCTTGGACTCTTGACAGATTTGGCATTGTTCCATATCAACTCTAATAGGTTTTGTGGGATAATTCCTCATAGCTTTTCTAAGCTCACTCTCATGTTTGAGTTTGATGTCAGTAACAACCGCTTCGTTGGCCATTTTCCAGAAGTTGTTTTTTATTGGCGTATCGCTAAGTACCTCGATCTTAGGTTCAATGACTTTGAAGGAGAAGTCCCACCGGCACTCTTCACTATGAACTTCGACGCCATATTCTTAAACAACAATAGATTTAGTTCCTTCATCCCGAATACTATTGGAAACTCCACTGTCTCCGTTGTGTCCTTTGCGTACAACTACTTCCATGGCTGCATTCCCCAAACCATTGGCCAAATGAGCAGCCTCAACCAGGTTCTCTTCATCGGCAACAACCTCGATGGTTGTCTCCCAGTCGAGATTGGAAAGCTTGTCAATCTAACGGTGCTTGATATCAGCAACAATAGCTTTCCTGGTTGGTTGCCCACGTTGTCGGGACTCAAGAATTTGCAGTGTCTTGATGTTAGTTACAATGAACTCAGGGGCTCTATTTCTGGGGAGATATGCAAATTGCCTCGTTTAGGTGGCTTTAATTACTCCTCTAATTATTTTAATCAGCAAGATAAAGAATGTGTGGGATCTAAAGATTCAAAAAAGATTTTTAGTGACGTTCATAATTGCTTGCCCAATCGCCCGGAGCAGAGAGATGTTGAGAGTTGCAGCTCTTTTATGATGAAGTCGGTGAAGTGTAGAGGTTGTGGTGAAGATCCAGCTAGTCAATCTCCGACCCATCCGATACGGGTTCGTAGGCCACCAACTTCAGAATCGGGTAAACCCCCAGTTCCATCCTCACCTCATCATCATCATCACGAAGTTCCGTCATCACCTCATCATCATCATCATCATCATCACGAAGTTCCATCCTCACCTCATCATCATCATCATCATCATCATGAAGTTCCATCTCCGCCGCCGCCGACCGAGTCTCCGCCGCCGCCGACCGAGTCTCCGCCGCCGACGACCGAGTCTCCGACACCACCGACCGAGTCTCCGACACCACCGACCGAGTCTCCGCCGCCGACGACCGAGTCTCCGCCACCGCCAGTGTACTCTCCCCCACCTCCGACCGCATCCCCGCCACCGCCAGTGTACTCTCCCCCACCTCCGACCGCATCCCCGCCGCCGCCAGTGTACTCTCCCCCACCTCCGACCGCATCCCCGCCGCCGCCAGTCTACTCTCCCCCACCTCCGACCGCATCCCCGCCGCCGCCAGTCTACTCTCCCCCACCTCCGACCGCATCTCCACCGCCACCGACTGCATCTCCACCGCCACCCATCCCCTCTCCACCGCCACCCATCCCCTCTCCACCGCCACCCATCCCCTCTCCACCGCCACCCGTCCACTCTCCCCCTCCTCCTACTGCATCTCCACCTCCTCCCGAGCACTCTCCACCTCCTCCGACCGCATCTCCTCCTCCTCCTCATGGTGCTTCTCCACCACCGGCGATCGAAGACCTCATCCTACCACCAAACATTGGTTTCCAATATTCATCTCCACCACCACCACANGCATCTCCCCCTCCTCCTACCGCATCTCCGCCTCCTCCTACCGCATCTCCGCCTCCTCCTACCGCATCTCCCCCTCCTCCTACCGCATCTCCCCCTCCTCCTACCGCATCTCCGCCTCCTCCTCCCGCTGCTTCTCCACCACCGGCATTCGAAGACCTCATCCTACCACCAAACATCGGTTTCCAATATGCATCTCCACCACCACCACAGTTCCCCGGATATTGA 2193 52.17 MSSLLLFLLLVFTLPLVSLAVSKAEVSYLINRQLLALREHEELPDDYKYEVEVNSHETFINERLKKAFVALKAWKAAIYSDPYNFTENWVGNDVCLYRGVFCTSALDDSTVEVVAGIDLNHADIAGYLPPELGLLTDLALFHINSNRFCGIIPHSFSKLTLMFEFDVSNNRFVGHFPEVVFYWRIAKYLDLRFNDFEGEVPPALFTMNFDAIFLNNNRFSSFIPNTIGNSTVSVVSFAYNYFHGCIPQTIGQMSSLNQVLFIGNNLDGCLPVEIGKLVNLTVLDISNNSFPGWLPTLSGLKNLQCLDVSYNELRGSISGEICKLPRLGGFNYSSNYFNQQDKECVGSKDSKKIFSDVHNCLPNRPEQRDVESCSSFMMKSVKCRGCGEDPASQSPTHPIRVRRPPTSESGKPPVPSSPHHHHHEVPSSPHHHHHHHHEVPSSPHHHHHHHHEVPSPPPPTESPPPPTESPPPTTESPTPPTESPTPPTESPPPTTESPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPTASPPPPIPSPPPPIPSPPPPIPSPPPPVHSPPPPTASPPPPEHSPPPPTASPPPPHGASPPPAIEDLILPPNIGFQYSSPPPPXASPPPPTASPPPPTASPPPPTASPPPPTASPPPPTASPPPPPAASPPPAFEDLILPPNIGFQYASPPPPQFPGY 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5557269 5559461 - CmaCh08G008960.1 Cma08g00896 299591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00896 730 MobiDBLite consensus disorder prediction 384 730 - -
Cma08g00896 730 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 3 571 - -
Cma08g00896 730 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 541 655 - -
Cma08g00896 730 SUPERFAMILY L domain-like 70 342 - -
Cma08g00896 730 PRINTS Proline rich extensin signature 450 466 - -
Cma08g00896 730 PRINTS Proline rich extensin signature 487 512 - -
Cma08g00896 730 PRINTS Proline rich extensin signature 390 406 - -
Cma08g00896 730 PRINTS Proline rich extensin signature 467 484 - -
Cma08g00896 730 MobiDBLite consensus disorder prediction 424 452 - -
Cma08g00896 730 Gene3D Ribonuclease Inhibitor 67 359 IPR032675 -
Cma08g00896 730 MobiDBLite consensus disorder prediction 647 709 - -
Cma08g00896 730 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 571 - -
Cma08g00896 730 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 541 655 - -
Cma08g00896 730 MobiDBLite consensus disorder prediction 456 639 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00896 - - - cmos:111464553 754.977
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00896 Cma-Chr8:5557269 Cma09g00199 Cma-Chr9:826607 3.94E-167 dispersed
Cma08g00896 Cma-Chr8:5557269 Cma08g00898 Cma-Chr8:5563777 0 proximal
Cma17g00446 Cma-Chr17:2660615 Cma08g00896 Cma-Chr8:5557269 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma09g00199 . 38 391 Leucine-rich Repeat extension Gene Families AT1G62440 59.3 1.8e-51 201.8
Cma14g01740 CST 43 370 Leucine-rich Repeat extension Gene Families AT1G62440 63.0 9.8e-50 196.1
Cma01g01874 . 61 399 Leucine-rich Repeat extension Gene Families AT1G62440 54.9 7.0e-48 189.9
Cma05g01334 CCT 174 343 Leucine-rich Repeat extension Gene Families AT1G62440 71.8 6.1e-44 176.8
Cma08g00898 . 36 260 Leucine-rich Repeat extension Gene Families AT1G62440 58.0 3.1e-43 174.5
Cma08g00896 . 35 259 Leucine-rich Repeat extension Gene Families AT1G62440 56.6 5.8e-42 170.2
Cma17g00446 . 42 225 Leucine-rich Repeat extension Gene Families AT1G62440 63.6 3.0e-38 157.9
Cma05g01334 CCT 117 520 Leucine-rich Repeat extension Gene Families AT4G13340 72.6 3.2e-66 250.8
Cma14g01740 CST 43 368 Leucine-rich Repeat extension Gene Families AT4G13340 70.6 1.7e-54 211.8
Cma09g00199 . 16 261 Leucine-rich Repeat extension Gene Families AT4G13340 65.0 1.1e-53 209.1
Cma08g00898 . 26 260 Leucine-rich Repeat extension Gene Families AT4G13340 63.4 3.6e-49 194.1
Cma08g00896 . 21 259 Leucine-rich Repeat extension Gene Families AT4G13340 61.5 5.2e-48 190.3
Cma01g01874 . 17 221 Leucine-rich Repeat extension Gene Families AT4G13340 62.0 1.3e-43 175.6
Cma17g00446 . 30 225 Leucine-rich Repeat extension Gene Families AT4G13340 62.2 4.9e-38 157.1
Cma06g01378 CST 37 370 Leucine-rich Repeat extension Gene Families AT4G13340 62.4 4.1e-37 154.1
Cma05g01334 CCT 149 520 Leucine-rich Repeat extension Gene Families AT3G24480 74.1 7.0e-70 262.3
Cma09g00199 . 16 399 Leucine-rich Repeat extension Gene Families AT3G24480 62.2 2.3e-57 220.7
Cma14g01740 CST 43 368 Leucine-rich Repeat extension Gene Families AT3G24480 67.3 2.4e-54 210.7
Cma08g00898 . 17 260 Leucine-rich Repeat extension Gene Families AT3G24480 58.6 9.5e-51 198.7
Cma08g00896 . 21 259 Leucine-rich Repeat extension Gene Families AT3G24480 59.0 8.0e-50 195.7
Cma01g01874 . 25 221 Leucine-rich Repeat extension Gene Families AT3G24480 66.2 1.7e-47 188.0
Cma17g00446 . 30 405 Leucine-rich Repeat extension Gene Families AT3G24480 58.9 1.5e-43 174.9
Cma06g01378 CST 37 370 Leucine-rich Repeat extension Gene Families AT3G24480 59.1 1.0e-36 152.1
Cma14g01740 CST 15 369 Leucine-rich Repeat extension Gene Families AT3G22800 69.9 7.9e-71 265.4
Cma06g01378 CST 39 369 Leucine-rich Repeat extension Gene Families AT3G22800 64.5 3.2e-48 190.3
Cma09g00199 . 62 391 Leucine-rich Repeat extension Gene Families AT3G22800 61.9 1.3e-44 178.3
Cma11g01919 . 29 361 Leucine-rich Repeat extension Gene Families AT3G22800 61.7 2.8e-44 177.2
Cma08g00898 . 62 261 Leucine-rich Repeat extension Gene Families AT3G22800 68.3 2.2e-36 151.0
Cma05g01334 CCT 160 510 Leucine-rich Repeat extension Gene Families AT5G25550 63.1 2.5e-39 160.6
Cma01g01874 . 61 401 Leucine-rich Repeat extension Gene Families AT5G25550 53.3 1.2e-38 158.3
Cma06g01378 CST 37 369 Leucine-rich Repeat extension Gene Families AT5G25550 66.4 3.6e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00896 Cma_Chr08 FPKM 0.143867 0.081562 0.188699 0.265517 0.020689 0.0 0.059684 0.048843 0.013798 0.106153