Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00896 ATGTCTTCTCTTCTCCTCTTCCTTCTACTTGTCTTCACTCTCCCGTTGGTCTCCCTTGCGGTCTCGAAAGCTGAAGTTTCGTATCTCATTAATCGGCAACTTTTGGCTCTAAGAGAACACGAAGAACTCCCAGATGACTACAAATATGAAGTTGAAGTTAATTCTCATGAAACTTTCATAAATGAGAGGTTGAAGAAGGCTTTTGTTGCCCTCAAAGCTTGGAAAGCCGCCATATATTCGGACCCATATAACTTCACTGAAAATTGGGTTGGCAATGATGTCTGTCTTTATAGGGGCGTTTTTTGTACTTCGGCCCTTGATGACTCCACTGTTGAGGTTGTGGCTGGCATTGATTTGAACCATGCTGATATTGCAGGCTACTTGCCACCCGAGCTTGGACTCTTGACAGATTTGGCATTGTTCCATATCAACTCTAATAGGTTTTGTGGGATAATTCCTCATAGCTTTTCTAAGCTCACTCTCATGTTTGAGTTTGATGTCAGTAACAACCGCTTCGTTGGCCATTTTCCAGAAGTTGTTTTTTATTGGCGTATCGCTAAGTACCTCGATCTTAGGTTCAATGACTTTGAAGGAGAAGTCCCACCGGCACTCTTCACTATGAACTTCGACGCCATATTCTTAAACAACAATAGATTTAGTTCCTTCATCCCGAATACTATTGGAAACTCCACTGTCTCCGTTGTGTCCTTTGCGTACAACTACTTCCATGGCTGCATTCCCCAAACCATTGGCCAAATGAGCAGCCTCAACCAGGTTCTCTTCATCGGCAACAACCTCGATGGTTGTCTCCCAGTCGAGATTGGAAAGCTTGTCAATCTAACGGTGCTTGATATCAGCAACAATAGCTTTCCTGGTTGGTTGCCCACGTTGTCGGGACTCAAGAATTTGCAGTGTCTTGATGTTAGTTACAATGAACTCAGGGGCTCTATTTCTGGGGAGATATGCAAATTGCCTCGTTTAGGTGGCTTTAATTACTCCTCTAATTATTTTAATCAGCAAGATAAAGAATGTGTGGGATCTAAAGATTCAAAAAAGATTTTTAGTGACGTTCATAATTGCTTGCCCAATCGCCCGGAGCAGAGAGATGTTGAGAGTTGCAGCTCTTTTATGATGAAGTCGGTGAAGTGTAGAGGTTGTGGTGAAGATCCAGCTAGTCAATCTCCGACCCATCCGATACGGGTTCGTAGGCCACCAACTTCAGAATCGGGTAAACCCCCAGTTCCATCCTCACCTCATCATCATCATCACGAAGTTCCGTCATCACCTCATCATCATCATCATCATCATCACGAAGTTCCATCCTCACCTCATCATCATCATCATCATCATCATGAAGTTCCATCTCCGCCGCCGCCGACCGAGTCTCCGCCGCCGCCGACCGAGTCTCCGCCGCCGACGACCGAGTCTCCGACACCACCGACCGAGTCTCCGACACCACCGACCGAGTCTCCGCCGCCGACGACCGAGTCTCCGCCACCGCCAGTGTACTCTCCCCCACCTCCGACCGCATCCCCGCCACCGCCAGTGTACTCTCCCCCACCTCCGACCGCATCCCCGCCGCCGCCAGTGTACTCTCCCCCACCTCCGACCGCATCCCCGCCGCCGCCAGTCTACTCTCCCCCACCTCCGACCGCATCCCCGCCGCCGCCAGTCTACTCTCCCCCACCTCCGACCGCATCTCCACCGCCACCGACTGCATCTCCACCGCCACCCATCCCCTCTCCACCGCCACCCATCCCCTCTCCACCGCCACCCATCCCCTCTCCACCGCCACCCGTCCACTCTCCCCCTCCTCCTACTGCATCTCCACCTCCTCCCGAGCACTCTCCACCTCCTCCGACCGCATCTCCTCCTCCTCCTCATGGTGCTTCTCCACCACCGGCGATCGAAGACCTCATCCTACCACCAAACATTGGTTTCCAATATTCATCTCCACCACCACCACANGCATCTCCCCCTCCTCCTACCGCATCTCCGCCTCCTCCTACCGCATCTCCGCCTCCTCCTACCGCATCTCCCCCTCCTCCTACCGCATCTCCCCCTCCTCCTACCGCATCTCCGCCTCCTCCTCCCGCTGCTTCTCCACCACCGGCATTCGAAGACCTCATCCTACCACCAAACATCGGTTTCCAATATGCATCTCCACCACCACCACAGTTCCCCGGATATTGA 2193 52.17 MSSLLLFLLLVFTLPLVSLAVSKAEVSYLINRQLLALREHEELPDDYKYEVEVNSHETFINERLKKAFVALKAWKAAIYSDPYNFTENWVGNDVCLYRGVFCTSALDDSTVEVVAGIDLNHADIAGYLPPELGLLTDLALFHINSNRFCGIIPHSFSKLTLMFEFDVSNNRFVGHFPEVVFYWRIAKYLDLRFNDFEGEVPPALFTMNFDAIFLNNNRFSSFIPNTIGNSTVSVVSFAYNYFHGCIPQTIGQMSSLNQVLFIGNNLDGCLPVEIGKLVNLTVLDISNNSFPGWLPTLSGLKNLQCLDVSYNELRGSISGEICKLPRLGGFNYSSNYFNQQDKECVGSKDSKKIFSDVHNCLPNRPEQRDVESCSSFMMKSVKCRGCGEDPASQSPTHPIRVRRPPTSESGKPPVPSSPHHHHHEVPSSPHHHHHHHHEVPSSPHHHHHHHHEVPSPPPPTESPPPPTESPPPTTESPTPPTESPTPPTESPPPTTESPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPTASPPPPIPSPPPPIPSPPPPIPSPPPPVHSPPPPTASPPPPEHSPPPPTASPPPPHGASPPPAIEDLILPPNIGFQYSSPPPPXASPPPPTASPPPPTASPPPPTASPPPPTASPPPPTASPPPPPAASPPPAFEDLILPPNIGFQYASPPPPQFPGY 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5557269 5559461 - CmaCh08G008960.1 Cma08g00896 299591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00896 730 MobiDBLite consensus disorder prediction 384 730 - -
Cma08g00896 730 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 3 571 - -
Cma08g00896 730 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 541 655 - -
Cma08g00896 730 SUPERFAMILY L domain-like 70 342 - -
Cma08g00896 730 PRINTS Proline rich extensin signature 450 466 - -
Cma08g00896 730 PRINTS Proline rich extensin signature 487 512 - -
Cma08g00896 730 PRINTS Proline rich extensin signature 390 406 - -
Cma08g00896 730 PRINTS Proline rich extensin signature 467 484 - -
Cma08g00896 730 MobiDBLite consensus disorder prediction 424 452 - -
Cma08g00896 730 Gene3D Ribonuclease Inhibitor 67 359 IPR032675 -
Cma08g00896 730 MobiDBLite consensus disorder prediction 647 709 - -
Cma08g00896 730 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 571 - -
Cma08g00896 730 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 541 655 - -
Cma08g00896 730 MobiDBLite consensus disorder prediction 456 639 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00896 Cma-Chr8:5557269 Cma09g00199 Cma-Chr9:826607 3.94E-167 dispersed
Cma08g00896 Cma-Chr8:5557269 Cma08g00898 Cma-Chr8:5563777 0 proximal
Cma17g00446 Cma-Chr17:2660615 Cma08g00896 Cma-Chr8:5557269 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00896 - - cmos:111464553 754.977