Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma08g00896 | ATGTCTTCTCTTCTCCTCTTCCTTCTACTTGTCTTCACTCTCCCGTTGGTCTCCCTTGCGGTCTCGAAAGCTGAAGTTTCGTATCTCATTAATCGGCAACTTTTGGCTCTAAGAGAACACGAAGAACTCCCAGATGACTACAAATATGAAGTTGAAGTTAATTCTCATGAAACTTTCATAAATGAGAGGTTGAAGAAGGCTTTTGTTGCCCTCAAAGCTTGGAAAGCCGCCATATATTCGGACCCATATAACTTCACTGAAAATTGGGTTGGCAATGATGTCTGTCTTTATAGGGGCGTTTTTTGTACTTCGGCCCTTGATGACTCCACTGTTGAGGTTGTGGCTGGCATTGATTTGAACCATGCTGATATTGCAGGCTACTTGCCACCCGAGCTTGGACTCTTGACAGATTTGGCATTGTTCCATATCAACTCTAATAGGTTTTGTGGGATAATTCCTCATAGCTTTTCTAAGCTCACTCTCATGTTTGAGTTTGATGTCAGTAACAACCGCTTCGTTGGCCATTTTCCAGAAGTTGTTTTTTATTGGCGTATCGCTAAGTACCTCGATCTTAGGTTCAATGACTTTGAAGGAGAAGTCCCACCGGCACTCTTCACTATGAACTTCGACGCCATATTCTTAAACAACAATAGATTTAGTTCCTTCATCCCGAATACTATTGGAAACTCCACTGTCTCCGTTGTGTCCTTTGCGTACAACTACTTCCATGGCTGCATTCCCCAAACCATTGGCCAAATGAGCAGCCTCAACCAGGTTCTCTTCATCGGCAACAACCTCGATGGTTGTCTCCCAGTCGAGATTGGAAAGCTTGTCAATCTAACGGTGCTTGATATCAGCAACAATAGCTTTCCTGGTTGGTTGCCCACGTTGTCGGGACTCAAGAATTTGCAGTGTCTTGATGTTAGTTACAATGAACTCAGGGGCTCTATTTCTGGGGAGATATGCAAATTGCCTCGTTTAGGTGGCTTTAATTACTCCTCTAATTATTTTAATCAGCAAGATAAAGAATGTGTGGGATCTAAAGATTCAAAAAAGATTTTTAGTGACGTTCATAATTGCTTGCCCAATCGCCCGGAGCAGAGAGATGTTGAGAGTTGCAGCTCTTTTATGATGAAGTCGGTGAAGTGTAGAGGTTGTGGTGAAGATCCAGCTAGTCAATCTCCGACCCATCCGATACGGGTTCGTAGGCCACCAACTTCAGAATCGGGTAAACCCCCAGTTCCATCCTCACCTCATCATCATCATCACGAAGTTCCGTCATCACCTCATCATCATCATCATCATCATCACGAAGTTCCATCCTCACCTCATCATCATCATCATCATCATCATGAAGTTCCATCTCCGCCGCCGCCGACCGAGTCTCCGCCGCCGCCGACCGAGTCTCCGCCGCCGACGACCGAGTCTCCGACACCACCGACCGAGTCTCCGACACCACCGACCGAGTCTCCGCCGCCGACGACCGAGTCTCCGCCACCGCCAGTGTACTCTCCCCCACCTCCGACCGCATCCCCGCCACCGCCAGTGTACTCTCCCCCACCTCCGACCGCATCCCCGCCGCCGCCAGTGTACTCTCCCCCACCTCCGACCGCATCCCCGCCGCCGCCAGTCTACTCTCCCCCACCTCCGACCGCATCCCCGCCGCCGCCAGTCTACTCTCCCCCACCTCCGACCGCATCTCCACCGCCACCGACTGCATCTCCACCGCCACCCATCCCCTCTCCACCGCCACCCATCCCCTCTCCACCGCCACCCATCCCCTCTCCACCGCCACCCGTCCACTCTCCCCCTCCTCCTACTGCATCTCCACCTCCTCCCGAGCACTCTCCACCTCCTCCGACCGCATCTCCTCCTCCTCCTCATGGTGCTTCTCCACCACCGGCGATCGAAGACCTCATCCTACCACCAAACATTGGTTTCCAATATTCATCTCCACCACCACCACANGCATCTCCCCCTCCTCCTACCGCATCTCCGCCTCCTCCTACCGCATCTCCGCCTCCTCCTACCGCATCTCCCCCTCCTCCTACCGCATCTCCCCCTCCTCCTACCGCATCTCCGCCTCCTCCTCCCGCTGCTTCTCCACCACCGGCATTCGAAGACCTCATCCTACCACCAAACATCGGTTTCCAATATGCATCTCCACCACCACCACAGTTCCCCGGATATTGA | 2193 | 52.17 | MSSLLLFLLLVFTLPLVSLAVSKAEVSYLINRQLLALREHEELPDDYKYEVEVNSHETFINERLKKAFVALKAWKAAIYSDPYNFTENWVGNDVCLYRGVFCTSALDDSTVEVVAGIDLNHADIAGYLPPELGLLTDLALFHINSNRFCGIIPHSFSKLTLMFEFDVSNNRFVGHFPEVVFYWRIAKYLDLRFNDFEGEVPPALFTMNFDAIFLNNNRFSSFIPNTIGNSTVSVVSFAYNYFHGCIPQTIGQMSSLNQVLFIGNNLDGCLPVEIGKLVNLTVLDISNNSFPGWLPTLSGLKNLQCLDVSYNELRGSISGEICKLPRLGGFNYSSNYFNQQDKECVGSKDSKKIFSDVHNCLPNRPEQRDVESCSSFMMKSVKCRGCGEDPASQSPTHPIRVRRPPTSESGKPPVPSSPHHHHHEVPSSPHHHHHHHHEVPSSPHHHHHHHHEVPSPPPPTESPPPPTESPPPTTESPTPPTESPTPPTESPPPTTESPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPTASPPPPIPSPPPPIPSPPPPIPSPPPPVHSPPPPTASPPPPEHSPPPPTASPPPPHGASPPPAIEDLILPPNIGFQYSSPPPPXASPPPPTASPPPPTASPPPPTASPPPPTASPPPPTASPPPPPAASPPPAFEDLILPPNIGFQYASPPPPQFPGY | 730 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 5557269 | 5559461 | - | CmaCh08G008960.1 | Cma08g00896 | 299591 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma08g00896 | 730 | MobiDBLite | consensus disorder prediction | 384 | 730 | - | - | |
Cma08g00896 | 730 | PANTHER | POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 | 3 | 571 | - | - | |
Cma08g00896 | 730 | PANTHER | POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 | 541 | 655 | - | - | |
Cma08g00896 | 730 | SUPERFAMILY | L domain-like | 70 | 342 | - | - | |
Cma08g00896 | 730 | PRINTS | Proline rich extensin signature | 450 | 466 | - | - | |
Cma08g00896 | 730 | PRINTS | Proline rich extensin signature | 487 | 512 | - | - | |
Cma08g00896 | 730 | PRINTS | Proline rich extensin signature | 390 | 406 | - | - | |
Cma08g00896 | 730 | PRINTS | Proline rich extensin signature | 467 | 484 | - | - | |
Cma08g00896 | 730 | MobiDBLite | consensus disorder prediction | 424 | 452 | - | - | |
Cma08g00896 | 730 | Gene3D | Ribonuclease Inhibitor | 67 | 359 | IPR032675 | - | |
Cma08g00896 | 730 | MobiDBLite | consensus disorder prediction | 647 | 709 | - | - | |
Cma08g00896 | 730 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 3 | 571 | - | - | |
Cma08g00896 | 730 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 541 | 655 | - | - | |
Cma08g00896 | 730 | MobiDBLite | consensus disorder prediction | 456 | 639 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00896 | Cma-Chr8:5557269 | Cma09g00199 | Cma-Chr9:826607 | 3.94E-167 | dispersed | |
Cma08g00896 | Cma-Chr8:5557269 | Cma08g00898 | Cma-Chr8:5563777 | 0 | proximal | |
Cma17g00446 | Cma-Chr17:2660615 | Cma08g00896 | Cma-Chr8:5557269 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma08g00896 | - | - | cmos:111464553 | 754.977 |