Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00898 ATGGCTTCTCTCCCTCTCTTCATCCTCATTGTGGTCTTCACTCTCCCATCGGTCTCCCTTGCCGTCACGAAAGCTGAAGTTTCATATCTCATTGGCCGTCAACTTTTGGCTCTAAGAGAACACGATGAACTCCCAGATGACTATAAATATGATGCTGAAATTGATCCTCATGAAACTTTCATAAATGAGAGGTTGAAGAAGGCTTTTGTTGCCCTCAAAGCTTGGAAATCTGCCATATATTCTGACCCAAATAACTTCACTAAAAATTGGATTGGCAATGATGTCTGTCTTTATAGGGGCGTTTTTTGTACTACGGCACTTGATGACTCCACCGTTGAGGTTGTGGCTGGCATTGATTTGAATCATGCTGATATTGCAGGCTACTTGCCACCCGAGCTTGGACTCTTGACAGATTTGGCTTTGTTCCATATCAACTCTAATAGATTTTGTGGGATAATTCCTCGTAGCTTTTCTAAGCTGACTCTCATGTTTGAGTTTGATGTCAGTAACAACCGCTTCGTTGGCCATTTTCCAGAGGTTGTCTTTCATTGGCGTATCGCTAAGTTCCTCGATCTTAGGTTCAACGACTTTGAAGGAGAAGTCCCACCGGCACTCTTCACTATGACCTTCGACGCCATATTCTTAAACAACAATAGATTCAGTTCCTTAATCCCGGATACCATTGGAAACTCCACTGTCTCTCTTGTGTCCTTTGCGTACAACTACTTCTATGGCTGCATTCCCAGTTCTATCGGCCAAATGAGCAGCCTCAATCAGGTTCTCTTTATTGGCAACAAACTCCATGGCTGTCTCCCAGTCGAGATTGGAACACTTGTCAATCTAACGGTGCTTGATATCAGCAATAATAGCTTTCCTGGCTGGTTGCCCACATTGTCGGGGCTTAAGAATTTGCAGAGTTTGGATGTTAGTTACAATGAACTTAGAGGCTCTGTTTCTGGGGAGATATGCAAATTGCCTCATTTGCTTAACTTTAATTTCTCCTTTAATTATTTTGATGGGCAAGATGCAGAGTGTGTGACACCTAAAGATTCAAAAAAGATTTTTGATGATGCTCATAATTGCTTGCTTAATCGCCCGGGGCAGAGAGATGCTGAGACTTGTAGCTCTTTTATGATGAAATCGGTGGAATGTAGAAATTGTGGTGAAGATCCTACTACAAGGTCTCCAGTGGTGGTTCGTACGCCGATACCAACTCCAGAATCTCATCATGCAGTTCCATCCTCACCTCATCATCATCATGTAGTTCCACCAACTCCAGAATCGAGCGACACCCCGGTTCCGCAAGTTGAAACTCATCAACCTGCAGTTCCACCGTCGGTTCCGCAAGTTGAAACTCATCACACTGCAGTTCCACCGTCGGTTCCGCAAGTTGAAACTCATCACACTGCAGTTCCACCGTCGGTTCCGCAAGTTGAAACTCATCACACTGCAGTTCCACCGTCGGTTCCGCAAGTTGACACTCATCACACTGCAGTTCCACCGTCGGTTCCGCAAGTTGACACTCATCACACTGCAGTTCCACCGTCGGTTCCGCAAGTTGACACTCATCACACTGCAGTTCCACCGTCGGTTCCGCAAGTTGAAACACATCACACTGCAGTTCCACCGTCGGTTCCGCAAGTTGACACTCATCACACTGCAGTTCCACCGTCGGTTCCGCAAGTTGACACACATCACACTGCAGTTCCACCGTCGGTTCCGCAAGTTGAAACACATCACACTGCAGTTCCACCGTCGGTTCCGCAAGTTGAAACACATCACACTGCCGTTCCACCGTCGGTTTCCACTGCCGTTCCACCGTCGGTTTCCACTGCCGTTCCACCGTCGGTTTCCACTGCAGTTCCACCGTCGGTTTCCACTGCCGTTCCACCGTCGGTTTCCACTACCGTTCCACCGTCGGTTTCCACTGCCGTTTCACCGTCGGTTTCCACTACCGTTCCACCGTCGGTTCCGCAAGTCGAAACTCATCACCATGCAGTTCCACCGTCGGTTCCGCAAGTCGAAACTCATCACCATGCAGTTCCACCGGCGGTTCCGCAAGTCGAAACTCATCACCATGCAGTTCCACCGGCGGTTCCGCAAGTCGAAACTCATCACCATGCAGTTCCACCGGCGGTTCCGCAAGTCGAAACTCATCACCATGCAGTTCCACCGGCGGTTCCGCAAGTCGAAACTCATCACCATGCAGTTCCACCGGCGGTTCCGCAAGTCGAAACTCCATCATCCTCAACTACATCCTCACCTCTTCCTCCACCAACTCCAAAATCGGGCGAACCCCCTATACCACAAGTTGAAACTCCATCATCCTCGGATACATCCTCACCTCCTCCACCAACTCCAGAATCTGGCGAACCCCCTGTTCAAGTTGAAACTCCACCATCCTCAGATACATCCTCACCTCCTCCATCAACTCCAGAATCTGGCGAACCCCCTGTTCAAGTTGAAACTCCACCATCCTCAGACACATCCTCACCTCCTCTTCCACCAACTCCAGAATCGGGCGAACCCCCTGTTCCACAAGTTGAAACTCCACCATCCTCAGACACATCATCCCCTCCTATTCCACCAACTCCAGAATCGGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACCGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCTACTCTCCCCCACCCCCGACAGCGTCTCCACCGCCACCCGTCCACTCTCCCCCTCCTCCTACTGCATCTCCACCTCCTCCCGAGCACTCTCCACCTCCTCCGACCGCATCTCCTCCTCCTCCTCATGGTGCTTCTCCACCACCGGCGATCGAAGACCTCATCCTACCACCAAACATTGGTTTCCAATATTCATCTCCACCACCACCACAGTTTCTCGGATATTGA 4275 57.12 MASLPLFILIVVFTLPSVSLAVTKAEVSYLIGRQLLALREHDELPDDYKYDAEIDPHETFINERLKKAFVALKAWKSAIYSDPNNFTKNWIGNDVCLYRGVFCTTALDDSTVEVVAGIDLNHADIAGYLPPELGLLTDLALFHINSNRFCGIIPRSFSKLTLMFEFDVSNNRFVGHFPEVVFHWRIAKFLDLRFNDFEGEVPPALFTMTFDAIFLNNNRFSSLIPDTIGNSTVSLVSFAYNYFYGCIPSSIGQMSSLNQVLFIGNKLHGCLPVEIGTLVNLTVLDISNNSFPGWLPTLSGLKNLQSLDVSYNELRGSVSGEICKLPHLLNFNFSFNYFDGQDAECVTPKDSKKIFDDAHNCLLNRPGQRDAETCSSFMMKSVECRNCGEDPTTRSPVVVRTPIPTPESHHAVPSSPHHHHVVPPTPESSDTPVPQVETHQPAVPPSVPQVETHHTAVPPSVPQVETHHTAVPPSVPQVETHHTAVPPSVPQVDTHHTAVPPSVPQVDTHHTAVPPSVPQVDTHHTAVPPSVPQVETHHTAVPPSVPQVDTHHTAVPPSVPQVDTHHTAVPPSVPQVETHHTAVPPSVPQVETHHTAVPPSVSTAVPPSVSTAVPPSVSTAVPPSVSTAVPPSVSTTVPPSVSTAVSPSVSTTVPPSVPQVETHHHAVPPSVPQVETHHHAVPPAVPQVETHHHAVPPAVPQVETHHHAVPPAVPQVETHHHAVPPAVPQVETHHHAVPPAVPQVETPSSSTTSSPLPPPTPKSGEPPIPQVETPSSSDTSSPPPPTPESGEPPVQVETPPSSDTSSPPPSTPESGEPPVQVETPPSSDTSSPPLPPTPESGEPPVPQVETPPSSDTSSPPIPPTPESASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVYSPPPPTASPPPPVHSPPPPTASPPPPEHSPPPPTASPPPPHGASPPPAIEDLILPPNIGFQYSSPPPPQFLGY 1424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5563777 5568808 - CmaCh08G008980.1 Cma08g00898 299593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00898 1424 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 1184 1288 - -
Cma08g00898 1424 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 1101 1202 - -
Cma08g00898 1424 SUPERFAMILY L domain-like 71 363 - -
Cma08g00898 1424 MobiDBLite consensus disorder prediction 752 768 - -
Cma08g00898 1424 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 781 964 - -
Cma08g00898 1424 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 1030 1132 - -
Cma08g00898 1424 MobiDBLite consensus disorder prediction 828 1403 - -
Cma08g00898 1424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1184 1288 - -
Cma08g00898 1424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1101 1202 - -
Cma08g00898 1424 MobiDBLite consensus disorder prediction 802 819 - -
Cma08g00898 1424 Gene3D Ribonuclease Inhibitor 68 360 IPR032675 -
Cma08g00898 1424 MobiDBLite consensus disorder prediction 403 663 - -
Cma08g00898 1424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 781 964 - -
Cma08g00898 1424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1030 1132 - -
Cma08g00898 1424 MobiDBLite consensus disorder prediction 778 794 - -
Cma08g00898 1424 MobiDBLite consensus disorder prediction 593 658 - -
Cma08g00898 1424 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 1283 1421 - -
Cma08g00898 1424 MobiDBLite consensus disorder prediction 740 1424 - -
Cma08g00898 1424 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 932 1035 - -
Cma08g00898 1424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 932 1035 - -
Cma08g00898 1424 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 6 660 - -
Cma08g00898 1424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 6 660 - -
Cma08g00898 1424 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1283 1421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01874 Cma-Chr1:12291107 Cma08g00898 Cma-Chr8:5563777 1.73E-141 dispersed
Cma08g00898 Cma-Chr8:5563777 Cma17g00446 Cma-Chr17:2660615 1.17E-178 dispersed
Cma08g00896 Cma-Chr8:5557269 Cma08g00898 Cma-Chr8:5563777 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00898 - - cmax:111494877 1240.71