Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00905 ATGAATTCGCGGGAAGATGTAATTACTGCGGTGCTTTTGGGTTTGTTGCTGACTTTGAGGCTGGTTTCTGCTGGGGATATAGTTCATCAGGACACTGTCGCACCCGCGCGCCCTGGTTGTGAGAATAATTTCGTTCTGGGATTGATGACTTACCCCTTCAGTGACTTTGACATTTTTGGAGTACTATTGGGTTGGGTGAATTCAATAATAGACGCCTGTTGGCATTCCAGCCTTTCTTCTCCTTTCAAGGTGAAAGTCCCTACTTGGGTTAATGGTGCAGCGGCCATTGAATATGTTGGTGTTGGTGCTCGGTTTGGCCCGACCTTGGAATCAAAGGAAAAACATGCTACTCATACTAGAGTTGCTCTGGCAGATCCTCCTGATTGTTGCAAACTTTTCAAGATGGTCTGTGAGGAGAATGAAACTGATGTAACCATAGGCATACCTGCTGTCATGCTCCCTCAAGATGCTGGTGATAGTATTGAGAGAAATTTAAAAAACCACATCTCAGTATCTGTGCAACTTTATTCCCCACTTCGACCAGTAGTAGACGTCGCTGAAGTATTTTTGTGGCTTATGGCTGTTGGTACTGTCTTAGTGGCTTCTTATTGGTCTGCATGGACTGCACGAGAAGCAGCTATCGAGCATGATAAGCTGTTGAAGGATGGTTCAGATGAGTTGCTGCAGACGGAAGCCACTGGTTCCAGTGGTTACATAGATATTAACACTACAGCTGCAATTCTCTTTGTCGTGATCGCTTCATGTTTCTTGGTTATGCTCTACAAATTAATGTCTTCCTGGTTTCTTGAAGTTCTTGTGGTTCTATTTTGCATCGGCGGTGCAGAGGTTGGGACGGTTCTCCTCAGCTGTGCCTTTTTGTACGACATTTTTTGGGTATTCGTCTCGAAATGGTGGTTCCATGAGAGCGTTATGATAGTGGTTGCTCGTGGTGATAAGAGTGGAGAAGTTGGTATACCCATGCTGCTTAAGATTCCACGGATGTTTGATCCTTGGGGAGGGTACAGCATTATCGGATTTGGTGATATTATCTTGCCTGGACTTGTAGTCGCATTTTCACTAAGATATGATTGGCTTGCGAAGAAGAAACTCCGAGCAGGTTACTTTGTTTGGGCAATGACTGCTTATGGCACAGGCCTACTCATCACTTACGTAGCTTTGAATTTAATGGACGGACATGGCCAACCCGCTTTGCTTTACATAGTTCCGTTCACCCTTGAAAATGGTTGCCCTAGTATTGATGCATGTCATCTTAAGTTCAGGCCTCCCTTTCTCTTTATAACTCCACCGCCGGCTACCACCCGCCACCTCTCACGGCCTATTCAGACAGCGACCCGCCCCCTATTATTCATCGTTGTTGCAGCTTGTAAAGAACCTGTAGACTCTCACCTTTTCATCTTCGTTTCTTCGTTGAATCTTCTTCTTCTTCTTCTTCTCCTTTTTGTTTTCTTGATTCCGTCTTTGCGCCGCCCTATTTCAGATTGGCAATTTTGCAATTTAACAATGGTTAGAGGCCTTGCAACTACTCTTTTAAGGATTTCCTCTTCAAGAAAATGTGACTCTCGGTTTAGGATTTTTACATGGAATAGATTGCTACATTCTAGTGGACAGTATGTTGAACATGGAATTCTCCAAAGTAATCCAGAGCTTCCTTTCTCAAGCACTTCGAATCAAGTTTGGTTTCGATTGCTTTCTCAGAGCTCAAGGTTTGGAGCCTTTAATAGTTTCAATGTGAGGGGATTCTCATTCGTAGGTAAGCACAAGGAAGATAACGAAAATGATGATGATACTGTAAGTGGTTCAAATGTGGTAGAAGTTGGGGAGTACGGTGCAGATGTTGGAAAAAATGTTTGCTTTGAGATTGATACTTGTGATTCAGTGATGATTACAGGTGGGGATGATTGCAGTGAGGGTAGCATTTGCGGTACCATTGTGGATGATTCTAAAAATGGTGGCGATGACCTAAGGTCATCAAAATTGAGGAATTATGAGACTATCAGATTGTCTGATCCTGTTGAATTATATCGTGAGCTTCGTAGTGTTGGACGGGGCAGTGCAAAGCCAGAACAATCTGAATGGTTAACTCTTCAAGAGATATTTCGATACTTTGCAAAATCTGGTTGGGCCAGCAATCAGGCTCTTGGTATTTACATTGGCTTGTCATTTTTTCAAACGGCTGTACATAAGTTTCAAAGCTTTTTCTTCAAGAAATGTTCTACTGATGTTATGAAGTATTTGGTGTTTCTTGGTCCTTCAAATGATGCTGTCAAATTCCTTTTTCCAATATTTGTTGAATACTGTTTAGAAGAGTTTCCAGATGAGATTAGGCGGTTTCGAAGTATGGTTGATTCAGCTGACCTTACTAAGCCACACACCTGGTTTCCATTTGCACGAGCAATGAAGCGTAAAATTATATACCATTGTGGTCCAACTAATAGTGGTAAAACTTACAATGCCTTGCAAAGGTTTATGGAAGCGAAGAAAGGGATTTATTGCAGTCCTCTTAGATTATTGGCAATGGAAGTGTTTGATAAGGTGAATGCTCATGGTGTTTATTGTAGCCTTCTCACAGGACAGGAAAAGAAACGTGTACCATTTTCTAGTCATATTGCCTGTACAGTTGAAATGGTGTCGACGGATGAGATGTATGAGGTTGCTGTAGTTGATGAGATTCAGATGATGTCAGACTCATATAGAGGATATGCATGGACAAGGGCTTTGCTTGGCTTGAAAGCTGATGAGATTCACTTATGTGGGGATCCTAGTGTTCTAAATGTTGTTCGTAAGATCTGTTCCGAAACTGGGGATGAGTTGCATGAACAACACTATGAGAGGTTTAAGCCATTGGTTGTTGAAGCTAAAACACTACTAGGCGATCTTAGAAATGTTAGATCTGGTGATTGTATTGTTGCCTTTTCAAGAAGGGAAATATTTGAGGTTAAGTTGGCAATTGAGAAGCTCACCAAACATCGATGTTGTGTTATTTATGGTGCTTTACCACCAGAGACTCGTAGACATCAAGCAAATTTGTTTAATGATCAACATAGTGAATTTGATGTGCTTGTTGCGAGTGATGCACTGGGAATGGGGCTAAATCTTAATATTAGGAGAGTTGTGTTTTACAATCTTGCAAAGTACAATGGGGACAAGGTTGTACCAGTTCCTGCTTCACAAGTTAAGCAGATTGCTGGGAGAGCAGGGCGCAGAGGAAGTCGCTACCCAGATGGACTTACAACCACATTAAATTTGGATGATCTTGATTACTTGATTGAATGTTTGAAACAACCGTTCGATGATGTTCAAAAGATTGGTCTCTTTCCTTGCTTTGAACAAGTTGAGCTATTTGCAGGGCAAGTCTCTAATGTTACATTCTGTCAGCTATTGGAAAAATTTAGTGAAAATTGTCGTCTAGATGGTTCTTACTTTTTATGTCGACATGATCATATAAAGAAAGTTGCAAATATGTTGGAGAAGGTCCAAGGATTATCTCTAGAAGATCGTTTTAACTTTTGTTTTGCCCCTGTTAATGTTAGAGATCCGAAGGCTATGTACCATCTTTTGAGGTTTGCTTCGTCATATAGTCACAATGTTCCAGTGAACATTGCAATGGGCATGCCCAAGGGTTCTGCTCGAAATGATACGGAGCTGTTGGATCTTGAGACGAAGCATCAAGTATTGTCAATGTATCTTTGGCTGTCCCAGCACTTCAAGGAAGAAACTTTTCCTTATGTCAAGAAGGCCGAGGTGATGGCAACAGATATTGCTGACTTATTAGGTCAATCTTTGACAAAAGCTAATTGGAAACCAGAATCAAGGCAAGCTGGGAAACCTAAGTCTCAGAGCAAAGAAGGGCATGAAAAGCCAAGGTCTCCCGTCAGCTTGTATGAGAAGCAAGCTATTTGA 3921 41.78 MNSREDVITAVLLGLLLTLRLVSAGDIVHQDTVAPARPGCENNFVLGLMTYPFSDFDIFGVLLGWVNSIIDACWHSSLSSPFKVKVPTWVNGAAAIEYVGVGARFGPTLESKEKHATHTRVALADPPDCCKLFKMVCEENETDVTIGIPAVMLPQDAGDSIERNLKNHISVSVQLYSPLRPVVDVAEVFLWLMAVGTVLVASYWSAWTAREAAIEHDKLLKDGSDELLQTEATGSSGYIDINTTAAILFVVIASCFLVMLYKLMSSWFLEVLVVLFCIGGAEVGTVLLSCAFLYDIFWVFVSKWWFHESVMIVVARGDKSGEVGIPMLLKIPRMFDPWGGYSIIGFGDIILPGLVVAFSLRYDWLAKKKLRAGYFVWAMTAYGTGLLITYVALNLMDGHGQPALLYIVPFTLENGCPSIDACHLKFRPPFLFITPPPATTRHLSRPIQTATRPLLFIVVAACKEPVDSHLFIFVSSLNLLLLLLLLFVFLIPSLRRPISDWQFCNLTMVRGLATTLLRISSSRKCDSRFRIFTWNRLLHSSGQYVEHGILQSNPELPFSSTSNQVWFRLLSQSSRFGAFNSFNVRGFSFVGKHKEDNENDDDTVSGSNVVEVGEYGADVGKNVCFEIDTCDSVMITGGDDCSEGSICGTIVDDSKNGGDDLRSSKLRNYETIRLSDPVELYRELRSVGRGSAKPEQSEWLTLQEIFRYFAKSGWASNQALGIYIGLSFFQTAVHKFQSFFFKKCSTDVMKYLVFLGPSNDAVKFLFPIFVEYCLEEFPDEIRRFRSMVDSADLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFDKVNAHGVYCSLLTGQEKKRVPFSSHIACTVEMVSTDEMYEVAVVDEIQMMSDSYRGYAWTRALLGLKADEIHLCGDPSVLNVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDLRNVRSGDCIVAFSRREIFEVKLAIEKLTKHRCCVIYGALPPETRRHQANLFNDQHSEFDVLVASDALGMGLNLNIRRVVFYNLAKYNGDKVVPVPASQVKQIAGRAGRRGSRYPDGLTTTLNLDDLDYLIECLKQPFDDVQKIGLFPCFEQVELFAGQVSNVTFCQLLEKFSENCRLDGSYFLCRHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNVRDPKAMYHLLRFASSYSHNVPVNIAMGMPKGSARNDTELLDLETKHQVLSMYLWLSQHFKEETFPYVKKAEVMATDIADLLGQSLTKANWKPESRQAGKPKSQSKEGHEKPRSPVSLYEKQAI 1306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5613224 5627991 - CmaCh08G009050.1 Cma08g00905 299600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00905 1306 Pfam Signal peptide peptidase 282 412 IPR007369 GO:0004190|GO:0016021
Cma08g00905 1306 Gene3D - 1179 1283 - -
Cma08g00905 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 804 916 IPR027417 -
Cma08g00905 1306 Gene3D - 951 1103 IPR027417 -
Cma08g00905 1306 Pfam Helicase conserved C-terminal domain 968 1076 IPR001650 -
Cma08g00905 1306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 960 1205 IPR027417 -
Cma08g00905 1306 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 802 918 IPR014001 -
Cma08g00905 1306 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 608 1291 - -
Cma08g00905 1306 Pfam Mitochondrial degradasome RNA helicase subunit C terminal 1222 1269 IPR022192 GO:0016817
Cma08g00905 1306 SMART psh_8 237 425 IPR006639 GO:0004190|GO:0016021
Cma08g00905 1306 MobiDBLite consensus disorder prediction 1271 1306 - -
Cma08g00905 1306 Pfam Suv3 C-terminal domain 1 1158 1200 IPR041082 -
Cma08g00905 1306 SMART helicmild6 982 1076 IPR001650 -
Cma08g00905 1306 PANTHER ATP-DEPENDENT RNA HELICASE SUPV3L1, MITOCHONDRIAL 608 1291 - -
Cma08g00905 1306 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 961 1114 IPR001650 -
Cma08g00905 1306 MobiDBLite consensus disorder prediction 1281 1298 - -
Cma08g00905 1306 CDD SF2_C_suv3 953 1088 - -
Cma08g00905 1306 Gene3D - 791 1177 - -
Cma08g00905 1306 CDD DEXQc_Suv3 808 949 IPR044774 GO:0003724|GO:0005524
Cma08g00905 1306 Gene3D - 796 950 IPR027417 -
Cma08g00905 1306 SMART ultradead3 790 958 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00905 K17675 SUPV3L1, SUV3; ATP-dependent RNA helicase SUPV3L1/SUV3 [EC:3.6.4.13] - csv:101222788 1349.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma08g00905 Cma17g00435 CST
Cma08g00905 Cma17g00570 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00905 Cma-Chr8:5613224 Cma02g01443 Cma-Chr2:8301676 6.65E-67 dispersed
Cma14g01728 Cma-Chr14:12697043 Cma08g00905 Cma-Chr8:5613224 1.05E-127 transposed
Cma17g00435 Cma-Chr17:2574258 Cma08g00905 Cma-Chr8:5613224 4.91E-79 wgd
Cma18g01252 Cma-Chr18:9766061 Cma08g00905 Cma-Chr8:5613224 5.49E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1100 . . . . . . . . Cmo08g00877 Cmo17g00554 . . . . . . . . . . . . . . Cla08g00393 Cam08g0814 Cec08g0389 Cco08g0484 Clacu08g0523 . Cre08g0354 . . . Cone11ag0637 . . . . Blo02g00439 Blo07g00107 . Bda13g00263 . Bpe13g00727 Bma02g00979 Bma06g01433 . . . Cma08g00905 Cma17g00570 . Car17g00525 Cpe12g00484 . . . . . . . . . . . . . . . Lsi09g01570 . . Cme11g02164
Vvi15g856 . . . . Bpe14g00986 . . . Cmo08g00877 Cmo17g00413 . . . . . . . . . . . . . . . . . . . . . Cone14ag0361 Cone15ag0399 . . . Csa06g00059 Chy11g01645 . Blo02g00361 Blo16g00582 . Bda13g00343 . . Bma02g01054 . Sed05g0772 . . Cma08g00905 Cma17g00435 Car08g00785 Car17g00400 Cpe17g00362 Cpe12g00372 Bhi12g01860 Tan06g2030 Cmetu09g0211 Lac12g1720 Hepe03g0559 . Lcy13g0697 Cla06g00343 Cam06g0372 Cec06g0379 Cco06g0372 Clacu06g0364 Cmu06g0362 Cre06g1133 Lsi09g01570 . . Cme11g02164
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008551 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma08g00905 Cma_Chr08 FPKM 14.513381 15.797297 17.584452 17.099075 10.420483 10.752794 10.650156 18.506226 17.767485 19.212034