Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00912 ATGTTGGATCCAATGGCGTTATCGGGGTCGCAATCGTTCTATATTCAGAGGGGAATGAGCAATTCTGGCTCTGGAGCACAGGGCATGCGTTCCTCTACTAACCCAAATATGACTTTTCAGACCAACGCTGGAGGCAATAATGTTGGATCAGGCTTGCCAATGGACCCTAACCCTGCCATTTCACCTTATGGTGCCAATGTAGGGGCTCAATCGGGTGGAATGGTTGCGAGTGAACCGGTGAAACGGAAGCGAGGTCGGCCTCGCAAATATGGAACTGAAGGAACTGTGTCTTTGGCACTGTCCCCCTCTCCATCTGCCCCTAATCCAGCCAGTGTTGGCTCTTCGCCGAAGCGGGGTAGGGGACGGCCTCCCGGGTCGGGAAAGAAGCAACAGTTAGCTTCTCTTGGTGAACCACTCTCTGGTTCAGCTGGAATGGGTTTTACTCCACATGTTATAACCATTGGAGTAGGAGAAGATGTCGCTGCCAAAATTATGTCATTTTCACAACAGGGACCAAGAATTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTGACTCTTCGTCAGCCTTCGACTTCAGGAGGCACAGTCACGTACGAGGGGCGTTTTGAGATAATATGTCTATCGGGCTCGTACTCGCTTGGGGATATATCTGGTTCGAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCGAGCCCTGATGGTCGTGTTATCGGTGGTGGTGTAGGAGGAGCACTTATCGCAGCAACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGAAGTTCAAAGTCGAAGTACAAGAAGAGGGAAGCTGTCGAAGGCGTGATAGACTCGGATCATCAGGCGGTAGATCACGCAGTGGCGATCGCAAACGTGCAGCAGAATCAGAATCAGAATCAGAATCAGAATATGACTCCGACCTCCCCAGTTAGTATGTGGCCGTCGTCGCAGTCTCTGGACATGCGTAACGCACACATGGACATCGATCTGATGCGCGGGTGA 1017 51.92 MLDPMALSGSQSFYIQRGMSNSGSGAQGMRSSTNPNMTFQTNAGGNNVGSGLPMDPNPAISPYGANVGAQSGGMVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAPNPASVGSSPKRGRGRPPGSGKKQQLASLGEPLSGSAGMGFTPHVITIGVGEDVAAKIMSFSQQGPRIVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYSLGDISGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHQAVDHAVAIANVQQNQNQNQNQNMTPTSPVSMWPSSQSLDMRNAHMDIDLMRG 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5684400 5688408 + CmaCh08G009120.1 Cma08g00912 299607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00912 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 149 262 IPR005175 -
Cma08g00912 338 MobiDBLite consensus disorder prediction 18 141 - -
Cma08g00912 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 313 - -
Cma08g00912 338 MobiDBLite consensus disorder prediction 96 112 - -
Cma08g00912 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 147 272 - -
Cma08g00912 338 MobiDBLite consensus disorder prediction 301 321 - -
Cma08g00912 338 ProSiteProfiles PPC domain profile profile. 143 284 IPR005175 -
Cma08g00912 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 25 313 IPR039605 GO:0003680
Cma08g00912 338 MobiDBLite consensus disorder prediction 18 48 - -
Cma08g00912 338 PRINTS AT-hook-like domain signature 115 126 IPR017956 GO:0003677
Cma08g00912 338 PRINTS AT-hook-like domain signature 81 91 IPR017956 GO:0003677
Cma08g00912 338 Gene3D - 149 281 - -
Cma08g00912 338 CDD DUF296 148 262 IPR005175 -
Cma08g00912 338 SMART AT_hook_2 81 93 IPR017956 GO:0003677
Cma08g00912 338 SMART AT_hook_2 117 129 IPR017956 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma08g00912 Cma17g00425 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01357 Cma-Chr2:7915629 Cma08g00912 Cma-Chr8:5684400 7.27E-39 dispersed
Cma02g01459 Cma-Chr2:8380805 Cma08g00912 Cma-Chr8:5684400 9.38E-83 dispersed
Cma06g00655 Cma-Chr6:3231771 Cma08g00912 Cma-Chr8:5684400 2.01E-57 dispersed
Cma08g00912 Cma-Chr8:5684400 Cma02g01510 Cma-Chr2:8610196 2.73E-66 dispersed
Cma15g01221 Cma-Chr15:7725911 Cma08g00912 Cma-Chr8:5684400 4.52E-75 dispersed
Cma17g00425 Cma-Chr17:2504984 Cma08g00912 Cma-Chr8:5684400 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00912 - - csv:101203138 541.191