Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00920 ATGAGTTTTGGGGGTTTTCTTGACGGCGGCGGTGGAGGAAGCGGTGGTGCTCGAATCGTAGCCGATTTATCTTACGTCAACAACAACACCACTGCTTCCAATAATAACCCCACCGGCGGTATCCCTGGTGGCGGAATTATGCCATCTGGTGCAGTCGCTCCGCCGCGCCTTATAACTCAATCTCTCACCAAATCCATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACCTGGACGGCGGGCAAGGGGATTTGGCTGCCCGACTACCCGAGGGTTTCGAGCACAATGTTGGGAGAAGAGGCAGAGACGAAGAGCACGAGAGTAGATCTGGAAGTGACAACATGGACGGCGGCTCCGGCGACGACCAAGACGCCGCCGACAATCCTCCGAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAATCTGTTTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGCTTAGAAACCAGGCAAGTTAAGTTTTGGTTCCAAAATCGTCGGACCCAGATGAAGACCCAATTGGAACGCCATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGAGATGCCATGAGGAATCCGATCTGTTCAAACTGTGGTGGTCCGGCAATTATCGGAGAGATTTCGCTGGAAGAGCAGCAGTTAAGGATCGAGAATGCTCGTTTGAAGGATGAGTTGGACCGAGTTTGCACGCTAGCTGGGAAATTCCTTGGAAGACCGATTTCGTCCTTGGCTAACTCCATTGCACCTCCATTGCCAAGCTCGAGTTTGGAACTGGGAGTTGGGAGTAATGGATTTGGGAGTTTGACCATGGCGACGTCGATGCCTATTGGACCGGACTTTGGAGGCGGGTTGTCCGGTAATCTGTCTGTTGTTCAGCCACCTGTGAGGCCAACACCAGGGATGGGGCTCGATCGGTCGGTGGAGCGATCTATGCTACTCGAGCTTGCTTTGGCTGCCATGGATGAATTGGTTAAAATGGCTCAGACTGATGAGTCTCTTTGGATTGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAAGAATACATGAGGACATTCACTCCTTGCATCGGCATGAAACCTAACGGTTTCGTTACCGAGGCCTCGAGAGAAACTGGCATGGTGATTATCAACAGCCTTGCGCTCGTCGAGACATTGATGGACGCGAATCGATGGGCAGAGATGTTTCCATGTATGATTGCTCGAACGACAACCACCGATGTGATCTCCAGTGGCATGGGCGGAACAAGGAATGGTGCACTTCAACTGATGCATGCCGAGCTTCAAGTCCTCTCACCGTTAGTACCCGTCCGGGAAGTCAATTTTCTGCGGTTTTGCAAGCAGCACGCCGAAGGGGTTTGGGCTGTCGTCGACCTATCGGTGGATGCCATGCGAGAGACTCCAACCAGTGGTTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGGTGTGTCGTTCAAGACATGCCCAATGGATATTCCAAGGTTACGTGGGTGGAACATGCGGAGTACGATGATAGCCAAGTTCATCAGCTATACCGACCGCTTCTCAGCTCTGGTATGGGATTTGGAGCGCAACGGTGGGTTGCTATCCTTCAACGACAATGCGAGTGTCTCGCTATCCTCATGTCGTCTGCTGTACCTGTTCGAGATCACACTGCGATAACTGCAGGTGGGCGACGTAGTATGCTGAAGCTTGCACAACGAATGACAGCAAACTTCTGTGCGGGTGTGTGTGCATCAACGGTGCATAAATGGAACAAGCTGAATGCTGGTAGTGTGGATGAGGACGTACGTGTCATGACACGAAAGAGCGTCGACGATCCTGGGGAACCACCAGGCATTGTGTTGAGTGCTGCTACGTCGGTTTGGCTACCGTTATCACCTCAACGACTCTTCGACTTTCTCCGGGACGAACGATTGAGGAGCGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATAGCCAAAGGGCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTCTACAAGAGACTTGCATAGATGCGGCTGGGTCCCTTGTGGTGTACGCGCCGGTGGATATTCCGGCTATGCACGTCGTGATGAACGGCGGCGATTCGGCATATGTGGCGCTTCTGCCATCTGGGTTTGCTATAGTACCTGACGGGGCGGTGAGTCGAGGGCTGACAACGACGAACGGCAGCAGTCCAAGTGGCGGGGATGGGCCACAGAGCCAGAGAGTGACAGGCGGTGGTGGGTCCCTCCTGACCGTCGCGTTTCAAATACTCGTGAATAGCCTCCCTACAGCCAAGCTCACCGTGGAATCCGTTGAAACGGTCAATAATCTCATCTCTTGCACCGTTCAAAAGATCAAGGCCGCTCTTCAATGTGAAACCTAA 2520 52.58 MSFGGFLDGGGGGSGGARIVADLSYVNNNTTASNNNPTGGIPGGGIMPSGAVAPPRLITQSLTKSMFNSPGLSLALTNLDGGQGDLAARLPEGFEHNVGRRGRDEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELESVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCTLAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLSVVQPPVRPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDESLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDANRWAEMFPCMIARTTTTDVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDLSVDAMRETPTSGSSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVAILQRQCECLAILMSSAVPVRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPLSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVSRGLTTTNGSSPSGGDGPQSQRVTGGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 839
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5742070 5747068 + CmaCh08G009200.1 Cma08g00920 299615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00920 839 Pfam START domain 341 566 IPR002913 GO:0008289
Cma08g00920 839 SUPERFAMILY Bet v1-like 594 832 - -
Cma08g00920 839 SUPERFAMILY Homeodomain-like 115 190 IPR009057 -
Cma08g00920 839 CDD START_ArGLABRA2_like 336 565 - -
Cma08g00920 839 Coils Coil 231 251 - -
Cma08g00920 839 Gene3D - 120 206 - -
Cma08g00920 839 ProSiteProfiles 'Homeobox' domain profile. 130 190 IPR001356 GO:0003677
Cma08g00920 839 MobiDBLite consensus disorder prediction 90 140 - -
Cma08g00920 839 SMART START_1 341 566 IPR002913 GO:0008289
Cma08g00920 839 Pfam Homeodomain 133 188 IPR001356 GO:0003677
Cma08g00920 839 ProSiteProfiles START domain profile. 332 569 IPR002913 GO:0008289
Cma08g00920 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 78 837 - -
Cma08g00920 839 MobiDBLite consensus disorder prediction 94 113 - -
Cma08g00920 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 78 837 IPR042160 -
Cma08g00920 839 SUPERFAMILY Bet v1-like 334 566 - -
Cma08g00920 839 Coils Coil 184 216 - -
Cma08g00920 839 ProSitePatterns 'Homeobox' domain signature. 165 188 IPR017970 GO:0000981|GO:0006355
Cma08g00920 839 CDD homeodomain 132 190 IPR001356 GO:0003677
Cma08g00920 839 SMART HOX_1 131 194 IPR001356 GO:0003677
Cma08g00920 839 MobiDBLite consensus disorder prediction 768 788 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00106 Cma-Chr1:490656 Cma08g00920 Cma-Chr8:5742070 0 dispersed
Cma03g00527 Cma-Chr3:5028468 Cma08g00920 Cma-Chr8:5742070 0 dispersed
Cma07g00302 Cma-Chr7:1335086 Cma08g00920 Cma-Chr8:5742070 0 dispersed
Cma08g00707 Cma-Chr8:4309360 Cma08g00920 Cma-Chr8:5742070 7.96E-170 dispersed
Cma08g00920 Cma-Chr8:5742070 Cma19g00929 Cma-Chr19:8312158 0 dispersed
Cma14g01305 Cma-Chr14:10283301 Cma08g00920 Cma-Chr8:5742070 3.28E-24 dispersed
Cma19g00115 Cma-Chr19:685423 Cma08g00920 Cma-Chr8:5742070 8.32E-17 dispersed
Cma14g02014 Cma-Chr14:14093630 Cma08g00920 Cma-Chr8:5742070 0 wgd
Cma16g00140 Cma-Chr16:612841 Cma08g00920 Cma-Chr8:5742070 0 wgd
Cma17g00018 Cma-Chr17:72796 Cma08g00920 Cma-Chr8:5742070 0 wgd
Cma18g01234 Cma-Chr18:9694311 Cma08g00920 Cma-Chr8:5742070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35536 PF01852 START 2.40E-57 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00920 K09338 - csv:101222248 1527.3