Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00939 ATGGACAATTACGGTTCTTCGCCATCGTATCCATACCACAATCCATATGCATACCCTTGTTCATCTCCCCGTCAATACCCACCTGCTTCTCAATATCCACCTTCTCAATATCTACATCCTCATTATGCACATCCAAGTTTCGATCCATATGGTCGTCCTCTTTACCCTTACCCCTATAGTCCTTCACATGTCGCTCCATATGCGTATCCCCCACACCCATCCCATTCTGGATTAATAGAGTATATTCAACATCCACCTTCGTATTCTGGTCTTGTATCTTACCCTTATCCTTACTCCGACGCCTCATCGCCTAATAGTGGTGCTAGGCCATCCATTCATTATCATAGCAATTTCCAACATGGTACATCCCCATATCGGCATCAAGAATCTATTGCATACCCTTCACCAGAAACTCAATACCGACCACCCCCTTCACGAGTAAATAGCTTCTCTAGTCACTACAGGATTGATAACACTGATTCAGTCTCTTCTGCTCACCTGCCTATTGATGACATTTTGTGCAATGTACATTTGTCTGATCATCAACCAACTGCTCCTGCTTCACCTCCTGCACCTGTACCTGCACAACCTTCAGCTTCGTTATTGGCGAATTCTCCTCAAAGTATGAGATATGATCAGCGCGATCGATTTTATGGCTTTCCCAATTCATCCTTTTCTAGTTTCGATGTGGGGAATTCAGATCAATTGACTACATCCAAGCAACCTTTGTTTTCCCATTCAAGCTCATTTGGTGGGTCTCAACATAATCAGAACTTGCAGATTGTTCCATTGCACAGTAAAGCATCATTGAAAGTTTTGCTGTTACATGGAAACTTAGAAATATGGATTAATGAGGCCAGAAATCTTCCAAATATGGACATGTTTCACAAAACCTTAGGGGATATGTTTGCTAAATTACCTGGCAAAATTGAAGGACGCGTGAGTCATAAGATCACTAGTGACCCTTATGTATCGATATCTGTAGCAAATGCAATAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAACCCTGTATGGAGGCAACATTTCTATGTTCCCGTTGCACATTATGTTGCTGAAGTACTTTTTTTCGTTAAAGACAGTGATGTTGTTGGTTCACAGCTAATAGGAACTGTAGCAATTCCTGCAGAACAAATATATTCAGGGTCTATAGTTGAGGGAACCTTCCCAATCCTAAATAATGGGAAGCCATGTAAACCTGGAGCTGCACTGAACTTTTCTATTCAATATACCCCAATGGAGAGGCTCAGTGCTTATCATCATGGAGTGGGAGCTGGTCCTGATTATCAGGGAGTTCCTGATACATATTTCCCCCTCAGAAAGGGTGGAGCTGTTACTCTTTATCAAGATGCTCATGTTCCAGACGGTCACCTTCCAAATTTGATGCTTGATAATGGTATGTACTATGTACATGGGAAATGTTGGCATGACATCTTTGATTCCGTACGTCAGGCTCGCAGGTTAATTTACATAACTGGGTGGTCAGTATGGCACAAAGTTAAACTAGTTCGAGATACTGGCTATGGGACAGAGTGTACCCTTGGAGATCTCCTAAGGTCCAAGTCCCAGGAGGGAGTGAGAGTTCTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGTTATAAAACCGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCAGGTTTTTCAAACACTCCTCCGTTCAAGTGATACTTTGTCCTCGCATGGCTGGAAAACGACATAGTTGGGTTAAGCAAAAGGAAGTTGGAACTATTTATACCCACCATCAGAAAACGGTTATTGTGGATGCTGATGGTGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGACTTGATTTATGCGACGGCCGGTATGATACTCCATCACATCCCATATTTCGGACACTTCAAACAGTACACAAGGATGATTACCACAATCCTACGTACACGGGTAGTGCTGTTGGTTGTCCAAGAGAACCGTGGCATGATCTGCACAGCAAAATTGATGGTCCAGCAGCATACGATGTTTTGACGAATTTTGAGGAGAGATGGAGGAGGGCTTCAAAACCTCATGGGATAAAAAAGTTGAAATCATATGATGACGCTTTGCTACGGATTGAAAGAATTCCCGACATAATTGGAATTTCGGAATCTTACTGCACTAATGAAAATGACCCTGAATCATGGCATGTCCAGATTTTTCGCTCAATTGATTCAAGTTCTGTTAAAGATTTTCCAAAGGAACCAAAAGATGCCCCCAGCAAGAACCTTGTATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACAGCATATGTGAAAGCCATCCGAGCTGCCCAACATTACATTTATATAGAGAACCAATATTTTATTGGGTCATCCTTCAATTGGAACTCAAACAAAGATTTAGGTGCCAACAATTTGATCCCAATGGAAATTGCACTAAAGATTGCTGATAAAATCAGAGCAAATGAGAGGTTTGCTGCATATATTATCATTCCCATGTGGCCGGAGGGCGTTCCAACTGCTGCTGCCACTCAGAGGATATTATTTTGGCAGCAAAAAACGATGCAAATGATGTATGAAGTCATCTATAAGGCTTTGATGGAGGTTGGTCTTGAGGATGCATTCTCTCCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGCTACGGAGGGATATGATTCTTTGTGTTCTGAAAGTCCTAATGCAGAAAACACCCCTCAGGCGCTTAGTCGGAAAAGCAGAAGGTTTATGGTATACGTTCACTCCAAAGGCATGATAGTTGACGACGAGTTTGTGATTTTGGGATCTGCTAACATCAACCAGAGGTCCATGGAAGGAACTAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCACTATACGTGGGCAAGGAAAGTTTCACGTCCTCGTGGACAGATCTATGGATATCGGATGTCATTGTGGGCGGAGCATACGGGAACTATGGAAGACTGTTTCAACGAACCAGAGAGCCTGGAATGCGTGAAAAAACTTAGAACAATGGGAGAATCAAACTGGAAACAATTTGCTGGAGAAGATGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCTGTTGAAGTTGATAGAAGAGGGAGAGTAAGATCTCTTCCTGGACATGAAAACTTCCCAGACGTAGGAGGAAAAATAGTTGGTTCATTTCTTGGCATTCATGAGAACCTCACTATCTAA 3255 42.37 MDNYGSSPSYPYHNPYAYPCSSPRQYPPASQYPPSQYLHPHYAHPSFDPYGRPLYPYPYSPSHVAPYAYPPHPSHSGLIEYIQHPPSYSGLVSYPYPYSDASSPNSGARPSIHYHSNFQHGTSPYRHQESIAYPSPETQYRPPPSRVNSFSSHYRIDNTDSVSSAHLPIDDILCNVHLSDHQPTAPASPPAPVPAQPSASLLANSPQSMRYDQRDRFYGFPNSSFSSFDVGNSDQLTTSKQPLFSHSSSFGGSQHNQNLQIVPLHSKASLKVLLLHGNLEIWINEARNLPNMDMFHKTLGDMFAKLPGKIEGRVSHKITSDPYVSISVANAIIGRTFVISNNENPVWRQHFYVPVAHYVAEVLFFVKDSDVVGSQLIGTVAIPAEQIYSGSIVEGTFPILNNGKPCKPGAALNFSIQYTPMERLSAYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGMYYVHGKCWHDIFDSVRQARRLIYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRMAGKRHSWVKQKEVGTIYTHHQKTVIVDADGGNNRRKIIAFVGGLDLCDGRYDTPSHPIFRTLQTVHKDDYHNPTYTGSAVGCPREPWHDLHSKIDGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLRIERIPDIIGISESYCTNENDPESWHVQIFRSIDSSSVKDFPKEPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDLGANNLIPMEIALKIADKIRANERFAAYIIIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEDAFSPQDYLNFFCLGNREATEGYDSLCSESPNAENTPQALSRKSRRFMVYVHSKGMIVDDEFVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKVSRPRGQIYGYRMSLWAEHTGTMEDCFNEPESLECVKKLRTMGESNWKQFAGEDVTEMRGHLLKYPVEVDRRGRVRSLPGHENFPDVGGKIVGSFLGIHENLTI 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5850444 5860711 - CmaCh08G009390.1 Cma08g00939 299634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00939 1084 SMART pld_4 597 632 IPR001736 GO:0003824
Cma08g00939 1084 SMART pld_4 930 957 IPR001736 GO:0003824
Cma08g00939 1084 SMART C2_3c 278 396 IPR000008 -
Cma08g00939 1084 SUPERFAMILY Phospholipase D/nuclease 438 696 - -
Cma08g00939 1084 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 275 420 IPR035892 -
Cma08g00939 1084 PANTHER PHOSPHOLIPASE D ALPHA 1 167 1084 - -
Cma08g00939 1084 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 930 957 IPR001736 GO:0003824
Cma08g00939 1084 SUPERFAMILY Phospholipase D/nuclease 718 1016 - -
Cma08g00939 1084 Gene3D Endonuclease Chain A 741 979 - -
Cma08g00939 1084 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 597 632 IPR001736 GO:0003824
Cma08g00939 1084 Pfam C2 domain 277 399 IPR000008 -
Cma08g00939 1084 Pfam PLD-like domain 783 966 IPR025202 -
Cma08g00939 1084 PANTHER PHOSPHOLIPASE D 167 1084 IPR015679 -
Cma08g00939 1084 Pfam Phospholipase D C terminal 1004 1074 IPR024632 -
Cma08g00939 1084 Gene3D C2 domain 272 406 IPR035892 -
Cma08g00939 1084 MobiDBLite consensus disorder prediction 180 202 - -
Cma08g00939 1084 Pfam Phospholipase D Active site motif 598 632 IPR001736 GO:0003824
Cma08g00939 1084 Gene3D Endonuclease Chain A 475 711 - -
Cma08g00939 1084 CDD C2_plant_PLD 271 419 - -
Cma08g00939 1084 ProSiteProfiles C2 domain profile. 255 397 IPR000008 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00328 Cma-Chr5:1422755 Cma08g00939 Cma-Chr8:5850444 0 dispersed
Cma05g00383 Cma-Chr5:1686515 Cma08g00939 Cma-Chr8:5850444 0 dispersed
Cma06g00726 Cma-Chr6:3679605 Cma08g00939 Cma-Chr8:5850444 0 dispersed
Cma17g00003 Cma-Chr17:12987 Cma08g00939 Cma-Chr8:5850444 1.08E-15 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00939 K01115 - csv:101218942 1954.49