Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00942 ATGGGGAGAGGAAGAGTTGAACTGAAGCGAATAGAGAACAAAATCAACCGCCAAGTCACTTTCTCCAAGCGCCGTAATGGTCTCCTCAAAAAAGCTTATGAACTCTCTGTTCTTTGCGATGCTGAGGTCGCTCTCATCATCTTCTCCAGCCGCGGCAAGCTCTATGAATTCGGCAGCGCTGGTACGACGAAGACACTGGAGCGATACCAACGTTGTTGCTTCTCTCCTCAAGACAATTACAGCGAACGAGAATCCCAGAACTGGTTCGTGGAAATCTCGAAACTGAAAGCTAAATATGAATCGCTATGTCGCACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTTAAGGAGCTCCAAAATCTTGAAAAGCAACTCGAAGCAGCTCTTGCTCAAGCTAGACAAAGGAAGACTCAGATGATGACTGAGCAGATGGAAGATCTACGCAGAAAGGAACGTCAACTCGGAGATTTGAACCGAGAACTGAAGCTCAAGCTCGAGACAGAGGGACAAAATCTTAAAGCCATCCAAAGTTTTTGGAGCTCAAGTTCATCAGCTGCTGAACATGGCAACACCTTCCCGTTGTATCCTTCACAAGCTAGCACCATCGAGTATCAACACGAACCTATCTTACAAATCGGGTACCAAAATTATTTCTCAGAAGAGGGGCCATCTGTTCATATGGGTTATTTGAATTCCACTTAA 714 45.52 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRCCFSPQDNYSERESQNWFVEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQMMTEQMEDLRRKERQLGDLNRELKLKLETEGQNLKAIQSFWSSSSSAAEHGNTFPLYPSQASTIEYQHEPILQIGYQNYFSEEGPSVHMGYLNST 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5875347 5877754 + CmaCh08G009420.1 Cma08g00942 299637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00942 237 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma08g00942 237 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Cma08g00942 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cma08g00942 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma08g00942 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma08g00942 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma08g00942 237 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 227 - -
Cma08g00942 237 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Cma08g00942 237 Coils Coil 119 171 - -
Cma08g00942 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cma08g00942 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma08g00942 237 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma08g00942 237 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Cma08g00942 237 PANTHER MADS BOX PROTEIN 1 227 - -
Cma08g00942 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00942 Cma-Chr8:5875347 Cma17g01438 Cma-Chr17:9458518 4.11E-73 dispersed
Cma13g00575 Cma-Chr13:5776852 Cma08g00942 Cma-Chr8:5875347 2.49E-49 dispersed
Cma13g00813 Cma-Chr13:6864008 Cma08g00942 Cma-Chr8:5875347 3.05E-48 dispersed
Cma18g00312 Cma-Chr18:1663573 Cma08g00942 Cma-Chr8:5875347 1.18E-43 dispersed
Cma20g00254 Cma-Chr20:1241469 Cma08g00942 Cma-Chr8:5875347 5.16E-48 dispersed
Cma08g00942 Cma-Chr8:5875347 Cma08g00172 Cma-Chr8:956593 3.04E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35539 PF01486 K-box 2.70E-28 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00942 K09264 - csv:101219421 353.214