Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma08g00950 ATGGATGGAATTTCACCCCACAATCGCCCTCTTCCTCCTCTTTTCCTCTCCAAAGATCTCCACCTCCACCATGGATTATTTCACCACCACCAAAACTCCGACGACGACGCCGCCGCTGGATCTAGTGGTTCTAAGAGAGATCGGGAGGAGGAAAACCCAATCACGGCTGTGGCAACGGCGGCGGACAGTAAGGAATTGTCTAATTCCTCTTCTCGACGGCCACGTGGCCGACCAGCTGGCTCCAAAAACAAGCCGAAGCCGCCTATTATTATCACTAGAGACAGCGCCAACGCTCTCAGATCCCATCTCATTGAAATCGCCTCCGGCTCCGACATCGTCGACGCCCTCACCACCTTTGCGCGGCGGCGTCAACGCGGCGTTTGTATTTTAAGCGCTACCGGAACTGTCACCAACGTTACTCTCCGGCAGCCGGCTTCTCCTGGCGCTGTCATCAATTTACATGGCAGATTTGAAATTCTCTCCCTCTCTGGCTCCTTCCTCCCACCGCCGGCTCCCCCGGCCGCCTCCGGGCTGACCGTTTACTTAGCTGGCGGGCAGGGGCAGGTGGTGGGTGGGAATGTAATCGGCCCATTTTTGTCCTCCGGTCCGGTGATTATTATGGCGGCTTCTTTTGGTAATGCGGCGTATGAACGACTCCCGATTGATGACGACGACGAGACTTCTCCGGCAGCGGAGATGGCTGGACAACCGGCGGTGACCCCACCACCGCCGCCGCAATTGTTGGGGGATCCTAATGGGGGATTGTTTCATGGGGTGGCGCAGAATGTTGTGAATTCTTCATGCCAATTGCCGACGGAGGCGGCGGCGGCGCTTTGGAGAGGAGGTCGGCCACCGTATTGA 861 57.38 MDGISPHNRPLPPLFLSKDLHLHHGLFHHHQNSDDDAAAGSSGSKRDREEENPITAVATAADSKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEIASGSDIVDALTTFARRRQRGVCILSATGTVTNVTLRQPASPGAVINLHGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPFLSSGPVIIMAASFGNAAYERLPIDDDDETSPAAEMAGQPAVTPPPPPQLLGDPNGGLFHGVAQNVVNSSCQLPTEAAAALWRGGRPPY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5922784 5923644 - CmaCh08G009500.1 Cma08g00950 299645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma08g00950 286 MobiDBLite consensus disorder prediction 29 53 - -
Cma08g00950 286 CDD DUF296 100 211 IPR005175 -
Cma08g00950 286 MobiDBLite consensus disorder prediction 29 90 - -
Cma08g00950 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 286 IPR014476 GO:0003680
Cma08g00950 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 212 IPR005175 -
Cma08g00950 286 Gene3D - 99 229 - -
Cma08g00950 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 7 286 - -
Cma08g00950 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cma08g00950 286 MobiDBLite consensus disorder prediction 61 76 - -
Cma08g00950 286 ProSiteProfiles PPC domain profile profile. 96 236 IPR005175 -
Cma08g00950 286 MobiDBLite consensus disorder prediction 220 253 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01513 Cma-Chr2:8630962 Cma08g00950 Cma-Chr8:5922784 7.51E-92 dispersed
Cma08g00950 Cma-Chr8:5922784 Cma15g01175 Cma-Chr15:7443541 2.88E-79 dispersed
Cma17g00027 Cma-Chr17:116958 Cma08g00950 Cma-Chr8:5922784 1.46E-124 wgd
Cma06g01130 Cma-Chr6:7608057 Cma08g00950 Cma-Chr8:5922784 1.08E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma08g00950 - - csv:101220133 416.772